Zeynep Yılmaz

Ms. Zeynep Yılmaz

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 February 2022 in Biomolecules
Verified
Journal Article
Open access
PDF file
EDEcmel Mehmetbeyoglu Duman
Ecmel Mehmetbeyoglu Duman
LKLeila Kianmehr
Leila Kianmehr
MBmurat borlu
murat borlu
ZYZeynep Yılmaz
Zeynep Yılmaz
SKSeyma Basar Kılıc
Seyma Basar Kılıc
Minoo RassoulzadeganMinoo Rassoulzadegan
Minoo Rassoulzadegan
Functional long non-coding RNAs (lncRNAs) have been in the limelight in aging research because short telomeres are associated with higher levels of TERRA (Telomeric Repeat containing RNA). The genomic instability, which leads to short telomeres, is a mechanism observed in cell aging and in a class of cancer cells. Psoriasis, a skin disease, is a disorder of epidermal keratinocytes, with altered telomerase activity. Research on the fraction of nascent RNAs in hybrid with DNA offers avenues for new strategies. Skin and blood samples from patients were fractionated to obtain the RNA associated with DNA as a R-loop structure. The higher amount of TERRA levels attached with each chromosome end was found with psoriasis patients in blood and skin. In addition to telomeric TERRA, we evidenced accumulation of others non-coding RNA, such as non-telomeric TERRA and centromeric transcripts. Increased levels of non-coding RNAs attached to DNA correlates with a decreased in Ribonuclease HII (RNase-HII) transcript which means that overall unresolved DNA–RNA hybrids can ultimately weaken DNA and cause skin lesions. Since the genome is actively transcribed, cellular RNase-HII is essential for removing RNA from the DNA–RNA hybrid in controls of genome stability and epigenome shaping and can be used as a causal prognostic marker in patients with psoriasis.

Verified
Journal Article
Open access
PDF file
STserpil taheri
serpil taheri
ZKZüleyha Karaca
Züleyha Karaca
EDEcmel Mehmetbeyoglu Duman
Ecmel Mehmetbeyoglu Duman
ZHZuhal Hamurcu
Zuhal Hamurcu
ZYZeynep Yılmaz
Zeynep Yılmaz
FKFahrettin Kelestimur
Fahrettin Kelestimur
Traumatic brain injury (TBI) is a major health problem affecting millions of people worldwide and leading to death or permanent damage. TBI affects the hypothalamic–pituitary–adrenal (HPA) axis either by primary injury to the hypothalamic–hypophyseal region or by secondary vascular damage, brain, and/or pituitary edema, vasospasm, and inflammation. Neuroendocrine dysfunctions after TBI have been clinically described in all hypothalamic–pituitary axes. We established a mild TBI (mTBI) in rats by using the controlled cortical impact (CCI) model. The hypothalamus, pituitary, and adrenals were collected in the acute (24 h) and chronic (30 days) groups after TBI, and we investigated transcripts and protein-related autophagy (Lc3, Bcln1, P150, Ulk, and Atg5) and apoptosis (pro-caspase-3, cleaved caspase-3). Transcripts related to autophagy were reduced in the hypothalamus, pituitary, and adrenals after TBI, however, this was not reflected in autophagy-related protein levels. In contrast, protein markers related to apoptosis increased in the adrenals during the acute phase and in the pituitary during the chronic phase. TBI stresses induce a variation of autophagy-related transcripts without modifying the levels of their proteins in the HPA axis. In contrast, protein markers related to apoptosis are increased in the acute phase in the adrenals, which could lead to impaired communication via the hypothalamus, pituitary, and adrenals. This may then explain the permanent pituitary damage with increased apoptosis and inflammation in the chronic phase. These results contribute to the elucidation of the mechanisms underlying endocrine dysfunctions such as pituitary and adrenal insufficiency that occur after TBI. Although the adrenals are not directly affected by TBI, we suggest that the role of the adrenals along with the hypothalamus and pituitary should not be ignored in the acute phase after TBI.

18 April 2021 in Processes
Verified
Journal Article
Open access
PDF file
KBKeziban KORKMAZ BAYRAM
Keziban KORKMAZ BAYRAM
JFJuliette Fitremann
Juliette Fitremann
ABArslan Bayram
Arslan Bayram
ZYZeynep Yılmaz
Zeynep Yılmaz
EDEcmel Mehmetbeyoglu Duman
Ecmel Mehmetbeyoglu Duman
Minoo RassoulzadeganMinoo Rassoulzadegan
Minoo Rassoulzadegan
Background: N-heptyl-D-galactonamide (GalC7) is a small synthetic carbohydrate derivative that forms a biocompatible supramolecular hydrogel. In this study, the objective was to analyze more in-depth how neural cells differentiate in contact with GalC7. Method: Direct (ex vivo) cells of the fresh hippocampus and culture (In vitro) of the primary cells were investigated. In vitro, investigation performed under three conditions: on culture in neurospheres for 19 days, on culture in GalC7 gel for 7 days, and on culture in both neurospheres and GalC7 gel. Total RNA was isolated with TRIzol from each group, Sox8, Sox9, Sox10, Dcx, and Neurod1 expression levels were measured by qPCR. Result: Sox8 and Sox10, oligodendrocyte markers, and Sox9, an astrocyte marker, were expressed at a much higher level after 7 days of culture in GalC7 hydrogel compared to all other conditions. Dcx, a marker of neurogenesis, and Neurod1, a marker of neuronal differentiation, were expressed at better levels in the GalC7 gel culture compared to the neurosphere. Conclusions: These results show that the GalC7 hydrogel brings different and interesting conditions for inducing the differentiation and maturation of neural progenitor cells compared with polymer-based scaffolds or cell-only conditions. The differences observed open new perspectives in tissue engineering, induction, and transcript analysis.

13 April 2023 in Progress in Neuro-Psychopharmacology and Biological Psychiatry
Verified
Journal Article
Closed access
ESElif Funda Sener
Elif Funda Sener
HDHalime DANA
Halime DANA
RTReyhan Tahtasakal
Reyhan Tahtasakal
ZHZuhal Hamurcu
Zuhal Hamurcu
STserpil taheri
serpil taheri
Minoo RassoulzadeganMinoo Rassoulzadegan
Minoo Rassoulzadegan

7 February 2024 in Biomolecules
Verified
Journal Article
Open access
PDF file
ZYZeynep Yılmaz
Zeynep Yılmaz
KBKeziban Korkmaz Bayram
Keziban Korkmaz Bayram
EDEcmel Mehmetbeyoglu Duman
Ecmel Mehmetbeyoglu Duman
ZDZuleyha Doganyigit
Zuleyha Doganyigit
FBFeyzullah Beyaz
Feyzullah Beyaz
Minoo RassoulzadeganMinoo Rassoulzadegan
Minoo Rassoulzadegan
Recently, we described the alteration of six miRNAs in the serum of autistic children, their fathers, mothers, siblings, and in the sperm of autistic mouse models. Studies in model organisms suggest that noncoding RNAs participate in transcriptional modulation pathways. Using mice, approaches to alter the amount of RNA in fertilized eggs enable in vivo intervention at an early stage of development. Noncoding RNAs are very numerous in spermatozoa. Our study addresses a fundamental question: can the transfer of RNA content from sperm to eggs result in changes in phenotypic traits, such as autism? To explore this, we used sperm RNA from a normal father but with autistic children to create mouse models for autism. Here, we induced, in a single step by microinjecting sperm RNA into fertilized mouse eggs, a transcriptional alteration with the transformation in adults of glial cells into cells affected by astrogliosis and microgliosis developing deficiency disorders of the ‘autism-like’ type in mice born following these manipulations. Human sperm RNA alters gene expression in mice, and validates the possibility of non-Mendelian inheritance in autism.

24 August 2024 in Molecular Biology Reports
Verified
Journal Article
Closed access
PDF file
SKSeyma Basar Kılıc
Seyma Basar Kılıc
STserpil taheri
serpil taheri
EDEcmel Mehmetbeyoglu Duman
Ecmel Mehmetbeyoglu Duman
ESeda öksüm solak
eda öksüm solak
ZYZeynep Yılmaz
Zeynep Yılmaz
MBmurat borlu
murat borlu