Hassan Hakimi

Dr. Hassan Hakimi

Texas A&M University
orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 September 2022 in PLOS Pathogens
Verified
Journal Article
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HHHassan Hakimi
Hassan Hakimi
JYJunya Yamagishi
Junya Yamagishi
SKShin-Ichiro Kawazu
Shin-Ichiro Kawazu
MAMasahito Asada
Masahito Asada
Babesia are tick-borne protozoan parasites that can infect livestock, pets, wildlife animals, and humans. In the mammalian host, they invade and multiply within red blood cells (RBCs). To support their development as obligate intracellular parasites, Babesia export numerous proteins to modify the RBC during invasion and development. Such exported proteins are likely important for parasite survival and pathogenicity and thus represent candidate drug or vaccine targets. The availability of complete genome sequences and the establishment of transfection systems for several Babesia species have aided the identification and functional characterization of exported proteins. Here, we review exported Babesia proteins; discuss their functions in the context of immune evasion, cytoadhesion, and nutrient uptake; and highlight possible future topics for research and application in this field.

27 October 2017 in BMC Genomics
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Journal Article
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JYJunya Yamagishi
Junya Yamagishi
MAMasahito Asada
Masahito Asada
HHHassan Hakimi
Hassan Hakimi
TTTakeshi Q. Tanaka
Takeshi Q. Tanaka
CSChihiro Sugimoto
Chihiro Sugimoto
SI KawazuSI Kawazu
SI Kawazu
Babesia ovata, belonging to the phylum Apicomplexa, is an infectious parasite of bovids. It is not associated with the manifestation of severe symptoms, in contrast to other types of bovine babesiosis caused by B. bovis and B. bigemina; however, upon co-infection with Theileria orientalis, it occasionally induces exacerbated symptoms. Asymptomatic chronic infection in bovines is usually observed only for B. ovata. Comparative genomic analysis could potentially reveal factors involved in these distinguishing characteristics; however, the genomic and molecular basis of these phenotypes remains elusive, especially in B. ovata. From a technical perspective, the current development of a very long read sequencer, MinION, will facilitate the obtainment of highly integrated genome sequences. Therefore, we applied next-generation sequencing to acquire a high-quality genome of the parasite, which provides fundamental information for understanding apicomplexans. The genome was assembled into 14,453,397 bp in size with 5031 protein-coding sequences (91 contigs and N50 = 2,090,503 bp). Gene family analysis revealed that ves1 alpha and beta, which belong to multigene families in B. bovis, were absent from B. ovata, the same as in B. bigemina. Instead, ves1a and ves1b, which were originally specified in B. bigemina, were present. The B. ovata and B. bigemina ves1a configure one cluster together even though they divided into two sub-clusters according to the spp. In contrast, the ves1b cluster was more dispersed and the overlap among B. ovata and B. bigemina was limited. The observed redundancy and rapid evolution in sequence might reflect the adaptive history of these parasites. Moreover, same candidate genes which potentially involved in the distinct phenotypes were specified by functional analysis. An anamorsin homolog is one of them. The human anamorsin is involved in hematopoiesis and the homolog was present in B. ovata but absent in B. bigemina which causes severe anemia. Taking these findings together, the differences demonstrated by comparative genomics potentially explain the evolutionary history of these parasites and the differences in their phenotypes. Besides, the draft genome provides fundamental information for further characterization and understanding of these parasites.

1 January 2013 in Journal of Veterinary Medical Science
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AYAdrian Ybañez
Adrian Ybañez
TSThillaiampalam Sivakumar
Thillaiampalam Sivakumar
RYRochelle Haidee Daclan Ybañez
Rochelle Haidee Daclan Ybañez
JRJowarren Catingan Ratilla
Jowarren Catingan Ratilla
ZPZandro Obligado Perez
Zandro Obligado Perez
HIHisashi Inokuma
Hisashi Inokuma
Anaplasma marginale has been detected in the Philippines only by peripheral blood smear examination and serological methods. This study generally aimed to molecularly detect and characterize A. marginale in cattle and ticks in Cebu, Philippines. A total of 12 bovine blood samples and 60 Rhipicephalus (Boophilus) microplus ticks were collected on the Cebu Island in 2011. 16S rRNA-based screening-PCR and DNA sequencing revealed 8 cattle (66.7%) and 8 ticks (13.3%) to be positive for A. marginale, and 1 tick (1.7%) to be positive for A. centrale. Selected positive DNA samples were further characterized based on 16S rRNA (longer sequence), Msp5, Msp1α,gltA and groEL genes for phylogenetic analyses. Sequence identities of partial DNA fragments of A. marginale from the Philippines revealed 99.1–100% (16S rRNA, gltA, groEL and Msp5) and 94.3–97.6% (Msp1α) identities to the closest isolates from other countries. Moreover, sequence analysis of the Msp1α, gene showed 3 variants, including a case of co-infection with 2 variants. Phylogenetic analyses based on Msp1α and Msp5 genes revealed that Philippine A. marginale isolates formed a monophyletic lineage, and were phylogenetically related to Brazilian and Chinese isolates. On the other hand, a highly specific and sensitive nested PCR based on groEL, with a detection limit of 2 copies/PCR, was developed to detect A. marginale in the Philippines. This study reported the first molecular detection and characterization of A. marginale in cattle and R. microplus in Cebu, Philippines.

11 May 2015 in PLOS ONE
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Journal Article
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MAMasahito Asada
Masahito Asada
KYKazuhide Yahata
Kazuhide Yahata
HHHassan Hakimi
Hassan Hakimi
NYNaoaki Yokoyama
Naoaki Yokoyama
IIIkuo Igarashi
Ikuo Igarashi
SI KawazuSI Kawazu
SI Kawazu
Genetic manipulation is an essential technique to analyze gene function; however, limited methods are available for Babesia bovis, a causative pathogen of the globally important cattle disease, bovine babesiosis. To date, two stable transfection systems have been developed for B. bovis, using selectable markers blasticidin-S deaminase (bsd) or human dihydrofolate reductase (hdhfr). In this work, we combine these two selectable markers in a sequential transfection system. Specifically, a parent transgenic B. bovis line which episomally expresses green fluorescent protein (GFP) and human dihydrofolate reductase (hDHFR), was transfected with a plasmid encoding a fusion protein consisting of red fluorescent protein (RFP) and blasticidin-S deaminase (BSD). Selection with WR99210 and blasticidin-S resulted in the emergence of parasites double positive for GFP and RFP. We then applied this method to complement gene function in a parasite line in which thioredoxin peroxidase-1 (Bbtpx-1) gene was knocked out using hDHFR as a selectable marker. A plasmid was constructed harboring both RFP-BSD and Bbtpx-1 expression cassettes, and transfected into a Bbtpx-1 knockout (KO) parasite. Transfectants were independently obtained by two transfection methods, episomal transfection and genome integration. Complementation of Bbtpx-1 resulted in full recovery of resistance to nitrosative stress, via the nitric oxide donor sodium nitroprusside, which was impaired in the Bbtpx-1 KO parasites. In conclusion, we developed a sequential transfection method in B. bovis and subsequently applied this technique in a gene complementation study. This method will enable broader genetic manipulation of Babesia toward enhancing our understanding of the biology of this parasite.

5 October 2020 in PLOS Pathogens
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HHHassan Hakimi
Hassan Hakimi
TTThomas J. Templeton
Thomas J. Templeton
MSMiako Sakaguchi
Miako Sakaguchi
JYJunya Yamagishi
Junya Yamagishi
SMShinya Miyazaki
Shinya Miyazaki
MAMasahito Asada
Masahito Asada
Babesia bovis causes a pathogenic form of babesiosis in cattle. Following invasion of red blood cells (RBCs) the parasite extensively modifies host cell structural and mechanical properties via the export of numerous proteins. Despite their crucial role in virulence and pathogenesis, such proteins have not been comprehensively characterized in B. bovis. Here we describe the surface biotinylation of infected RBCs (iRBCs), followed by proteomic analysis. We describe a multigene family (mtm) that encodes predicted multi-transmembrane integral membrane proteins which are exported and expressed on the surface of iRBCs. One mtm gene was downregulated in blasticidin-S (BS) resistant parasites, suggesting an association with BS uptake. Induced knockdown of a novel exported protein encoded by BBOV_III004280, named VESA export-associated protein (BbVEAP), resulted in a decreased growth rate, reduced RBC surface ridge numbers, mis-localized VESA1, and abrogated cytoadhesion to endothelial cells, suggesting that BbVEAP is a novel virulence factor for B. bovis. Babesia bovis is an apicomplexan intraerythrocytic protozoan parasite which causes the most pathogenic form of babesiosis in cattle. Like other apicomplexan parasites, B. bovis-induced modification of host cells is crucial for its survival. However, our knowledge of Babesia surface exposed proteins is limited to variant erythrocyte surface antigen1 (VESA1), which is responsible for fatal cerebral babesiosis. Here we identified two novel exported proteins in B. bovis using red blood cell (RBC) surface biotinylation and mass spectrometry. One of the proteins was determined to be essential for parasite development and pathogenicity. Induced knockdown of this protein resulted in a decreased growth rate, reduced RBC surface protrusions created by the parasite, mis-localized VESA1, and abrogated cytoadhesion to endothelial cells. VESA1 is a ligand for cytoadhesion of iRBCs to capillary endothelial cells which leads to blockage of capillaries and causes cerebral symptoms. The second identified protein is encoded by a large multigene family. The gene was downregulated in blasticidin-S resistant parasites, suggesting that the protein mediates entry of blasticidin-S and likely other solutes across the iRBC membrane. This is the first description of a putative channel or transporter molecule on the surface of Babesia-iRBC. Our results provide new insights into the host cell modifications by B. bovis and their pathogenicity.

26 June 2019 in mSphere
Verified
Journal Article
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HHHassan Hakimi
Hassan Hakimi
TITakahiro Ishizaki
Takahiro Ishizaki
YKYuto Kegawa
Yuto Kegawa
OKOsamu Kaneko
Osamu Kaneko
SKShin-Ichiro Kawazu
Shin-Ichiro Kawazu
MAMasahito Asada
Masahito Asada
Babesia bovis is the most virulent cause of bovine babesiosis worldwide. The disease consequences are death, abortion, and economical loss due to reduced milk and meat production. Available vaccines are not effective, treatment options are limited, and emergence of drug and acaricide resistance has been reported from different regions. There is an urgent need to identify new drug and vaccine targets. Greater than half of the genes in B. bovis genome, including several expanded gene families which are unique for Babesia spp., have no predicted function. The available genetic engineering tools are based on conventional homologous recombination, which is time-consuming and inefficient. In this study, we adapted the CRISPR/Cas9 system as a robust genetic engineering tool for B. bovis . This advancement will aid future functional studies of uncharacterized genes.