Species distribution models (SDMs) relate species observations to mapped environmental variables to estimate the realized niche of species and predict their distribution. SDMs are key tools for projecting the impact of climate change on species and have been used in many biodiversity assessments. However, when fitted within spatial extents that do not encompass the whole species range (i.e. subrange), the estimated realized environmental niche can be truncated, which can lead to wrong or inaccurate predictions. A simple solution to this niche truncation consists in fitting SDMs at a spatial extent that encompasses the whole species range, but this often implies using a spatial resolution too coarse for local conservation assessments. To keep a fine resolution, a solution is to fit spatially nested SDMs (N‐SDMs), where a whole range, coarse‐grain SDM is combined with a subrange, fine‐grain SDM. N‐SDMs have demonstrated superior performance to subrange (truncated) SDMs in projecting species distributions under climate change and have accordingly regained considerable interest. Here, we review developments, applications and effectiveness of N‐SDMs. We present and discuss existing methods and tools to fit N‐SDMs, and assess when N‐SDMs are not needed. We highlight strengths and weaknesses of N‐SDMs, underline their importance in reducing niche truncation, and identify remaining challenges and future perspectives. Our review highlights that subrange SDMs most often lead to niche truncation and thus to incorrect spatial projections, a problem that can be overcome by using N‐SDMs. We show that the various N‐SDM methods come with their strengths and weaknesses and should be selected depending on the intended goal of the study. Synthesis. N‐SDMs are key tools to develop untruncated regional climate change forecasts of species distributions at fine resolution over restricted extent. While several N‐SDM approaches were proposed, there is currently no universal solution suggesting that further developments and testing are crucial if we are to derive robust future projections of species distributions, at least until SDMs can be applied for most species at high resolution over large geographic extents.
Spatial truncation in species distribution models (SDMs) might cause niche truncation and model transferability issues, particularly when extrapolating models to non‐analog environmental conditions. While broad calibration extents reduce truncation issues, they usually overlook local ecological factors driving species distributions at finer resolution. Spatially‐nested hierarchical SDMs (HSDMs) address truncation by merging (a) a global model calibrated with broadly extended, yet typically low‐resolution, basic, and imprecise data; and (b) a regional model calibrated with spatially restricted but more precise and reliable data. This study aimed to examine HSDMs' efficacy to overcome spatial truncation in national‐scale studies. We compared two hierarchical strategies (‘covariate', which uses the global model output as a covariate for the regional model, and ‘multiply', which calculates the geometric mean of the global and regional models) and a non‐hierarchical strategy. The three strategies were compared in terms of niche truncation, environmental extrapolation, model performance, species' predicted distributions and shifts, and trends in species richness. We examined the consistency of the results over two study areas (Spain and Switzerland), 108 tree species, and four future climate scenarios. Only the non‐hierarchical strategy was susceptible to niche truncation, and environmental extrapolation issues. Hierarchical strategies, particularly the ‘covariate' one, presented greater model accuracy than non‐hierarchical strategies. The non‐hierarchical strategy predicted the highest overall values and the lowest decreases over time in species distribution ranges and richness. Differences between strategies were more evident in Switzerland, which was more affected by niche truncation issues. Spain was more negatively affected by climate change and environmental extrapolation. The ‘covariate' strategy exhibited higher model performance than the ‘multiply' one. However, uncertainties regarding model temporal transferability advocate for adopting and further examining multiple hierarchical approaches. This research underscores the importance of adopting spatially‐nested hierarchical SDMs given the compromised reliability of non‐hierarchical approaches due to niche truncation and extrapolation issues.
Ecological modeling requires sufficient spatial resolution and a careful selection of environmental variables to achieve good predictive performance. Although national and international administrations offer fine-scale environmental data, they usually have limited spatial coverage (country or continent). Alternatively, optical and radar satellite imagery is available with high resolutions, global coverage and frequent revisit intervals. Here, we compared the performance of ecological models trained with free satellite data with models fitted using regionally restricted spatial datasets. We developed brown bear habitat suitability and connectivity models from three datasets with different spatial coverage and accessibility. These datasets comprised (1) a Sentinel-1 and 2 land cover map (global coverage); (2) pan-European vegetation and land cover layers (continental coverage); and (3) LiDAR data and the Forest Map of Spain (national coverage). Results show that Sentinel imagery and pan-European datasets are powerful sources to estimate vegetation variables for habitat and connectivity modeling. However, Sentinel data could be limited for understanding precise habitat–species associations if the derived discrete variables do not distinguish a wide range of vegetation types. Therefore, more effort should be taken to improving the thematic resolution of satellite-derived vegetation variables. Our findings support the application of ecological modeling worldwide and can help select spatial datasets according to their coverage and resolution for habitat suitability and connectivity modeling.
12 September 2024 in Methods in Ecology and Evolution
Species distribution models have evolved to combine species‐environment interactions across multiple scales. Spatially nested hierarchical models (NSDMs) offer a promising avenue by integrating datasets and predictive models from broad to fine scales. But a user‐friendly tool to execute these models remains an important ongoing challenge. To address this gap, we introduce the sabinaNSDM R package that provides a straightforward approach to develop NSDMs. This package merges global scale models, capturing extensive ecological niches, with regional scale models featuring high‐resolution covariates, to form a unified hierarchical modelling framework. This toolkit is designed to facilitate the implementation of NSDMs for ecologists, conservationists and researchers aiming to produce more reliable species distribution predictions. sabinaNSDM streamlines the data preparation, calibration, integration and projection of models across two scales. It automates (if necessary) the generation of background points, spatial thinning of species occurrence and absence (if available) data, covariate selection and the generation of NSDMs. This paper outlines the workflow and functions integrated into the sabinaNSDM package, complemented by an applied case study involving a pool of 76 tree species. Consistent with previous publications, the generated NSDMs facilitated precise predictions (mean AUC value through independent evaluation higher than 0.88) of species distributions under current and future environmental scenarios.
Context: Climate and land-use changes affect species ranges and movements. However, these changes are usually overlooked in connectivity studies, and this could have adverse consequences in the definition of effective management measures.Objectives: We evaluated two ways to incorporate landscape dynamics: (i) by analyzing connectivity as a fluctuating phenomenon (i.e., time-varying connectivity); and (ii) by analyzing species movements from past to current ranges (i.e., spatio-temporal connectivity). We also compared these dynamic approaches with traditional static connectivity methods.Methods: We compared the overall connectivity values and the prioritization of critical habitat patches according to dynamic and static approaches using habitat availability metrics (Probability of Connectivity and Equivalent Connected Area). This comparative research was conducted for species associated with broadleaf forests of the different ecoregions of the Iberian Peninsula. We considered species habitat preferences during movement and a wide range of dispersal abilities to assess functional connectivity.Results: Static approaches generated varying overall connectivity values and priority patches depending on the time snapshot considered and different from those generated by dynamic approaches. The two dynamic connectivity approaches resulted in very similar priority conservation patches, indicating their potential to guide enduring conservation measures that enhance connectivity between contemporary habitat patches at multiple time snapshots but also species range shifts in time.Conclusions: Connectivity is affected by landscape changes, and only dynamic approaches can overcome the issues associated with these changes and provide valuable information to guide improved and enduring measures in changing landscapes.
Background: When assessing connectivity, it is crucial to rely on accurate modeling frameworks that consider species movement preferences and patterns. One important aspect is the level of randomness or unpredictability in the route selection. In this respect, traditional approaches (based on least-cost path or circuit theory) consider species movements unrealistically as totally deterministic or as totally random. A recent approach (randomized shortest path) advocates for choosing intermediate levels of randomness through a single parameter. This parameter may be optimized by validating connectivity surfaces developed from different levels of randomness against observed movement data. However, connectivity models are seldom validated, and it is still unclear how to approach this task. To address this knowledge gap, this paper aims at comparing different validation methods to infer the optimal randomness level in connectivity studies. Additionally, we aimed to disentangle the practical consequences of applying traditional connectivity approaches versus using an optimized level of movement randomness when delineating corridors.Methods: These objectives were accomplished through the study case of the Iberian lynx, an endangered species whose maintenance and recovery depend on the current connectivity among its population nuclei. We firstly determined a conductance surface based on point selection functions accounting for the behavioral state (territorial or exploratory) of individuals. Secondly, we identified the level of randomness that better fits lynxes’ movements with independent GPS locations and different validation techniques. Lastly, we delineated corridors between lynx population nuclei through a) the randomized shortest path approach and the extreme and optimal levels of randomness of each validation method, and b) the traditional connectivity approaches.Results: According to all used validation methodologies, models with intermediate levels of randomness outperformed those with extreme randomness levels representing totally deterministic or random movements. We found differences in the optimal randomness level among validation methods but similar results in the delineation of corridors. Our results also revealed that models with extreme randomness levels (deterministic and random walk) of the randomized path approach provided equivalent corridor networks to those from traditional approaches. Moreover, these corridor networks calculated with traditional approaches showed notable differences in patterns from the corridor network calculated with an optimized randomness level.Conclusions: Here we presented a connectivity model with a solid biological basis that calibrates the level of movement randomness and is supported by comprehensive validation methods. It is thus a step forward in the search and evaluation of connectivity approaches that lead to improved, efficient, and successful management actions.