Material transportation scheduling problems concerning scheduling optimisation have been extensively investigated by researchers in such fields as industrial engineering and management science. Various algorithms have been proposed to solve such problems. However, the majority of these algorithms cannot be applied to a block transportation problem when a shipyard that uses a transporter, a large vehicle employed for moving weight, is considered. In this study, a hybrid optimisation algorithm is proposed for solving a block transportation problem when multiple transporters are used. With regards to the transporters, a minimisation of the travel distance without loading of and interference between the transporters is considered. A block transportation scheduling system is then developed based on the proposed algorithm. The developed system is applied to an actual block transportation scheduling problem of a shipyard. From the attained results, we demonstrate that the proposed algorithm has the ability to effectively solve the block transportation scheduling problems of a shipyard.