alexis carlier

Mr. alexis carlier

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2021 in Plant Phenomics
Verified
Journal Article
Open access
PDF file
EDEtienne David
Etienne David
MSMario Serouart
Mario Serouart
DSDaniel Smith
Daniel Smith
SMSimon Madec
Simon Madec
KVKaaviya Velumani
Kaaviya Velumani
Wei GuoWei Guo
Wei Guo
The Global Wheat Head Detection (GWHD) dataset was created in 2020 and has assembled 193,634 labelled wheat heads from 4700 RGB images acquired from various acquisition platforms and 7 countries/institutions. With an associated competition hosted in Kaggle, GWHD_2020 has successfully attracted attention from both the computer vision and agricultural science communities. From this first experience, a few avenues for improvements have been identified regarding data size, head diversity, and label reliability. To address these issues, the 2020 dataset has been reexamined, relabeled, and complemented by adding 1722 images from 5 additional countries, allowing for 81,553 additional wheat heads. We now release in 2021 a new version of the Global Wheat Head Detection dataset, which is bigger, more diverse, and less noisy than the GWHD_2020 version.

6 July 2022 in Computers and Electronics in Agriculture
Verified
Journal Article
Closed access
SDSébastien Dandrifosse
Sébastien Dandrifosse
EEElias Ennadifi
Elias Ennadifi
ACalexis carlier
alexis carlier
BGBernard Gosselin
Bernard Gosselin
BDBenjamin Dumont
Benjamin Dumont
BMBenoît Mercatoris
Benoît Mercatoris

1 September 2020 in Biosystems Engineering
Verified
Journal Article
Closed access
RBRomain Bebronne
Romain Bebronne
ACalexis carlier
alexis carlier
RMRémi Meurs
Rémi Meurs
VLVincent Leemans
Vincent Leemans
PVPhilippe Vermeulen
Philippe Vermeulen
BMBenoît Mercatoris
Benoît Mercatoris

3 April 2021 in Remote Sensing
Verified
Journal Article
Open access
PDF file
Sébastien DandrifosseSébastien Dandrifosse
Sébastien Dandrifosse
ACalexis carlier
alexis carlier
BDBenjamin Dumont
Benjamin Dumont
BMBenoît Mercatoris
Benoît Mercatoris
Multimodal images fusion has the potential to enrich the information gathered by multi-sensor plant phenotyping platforms. Fusion of images from multiple sources is, however, hampered by the technical lock of image registration. The aim of this paper is to provide a solution to the registration and fusion of multimodal wheat images in field conditions and at close range. Eight registration methods were tested on nadir wheat images acquired by a pair of red, green and blue (RGB) cameras, a thermal camera and a multispectral camera array. The most accurate method, relying on a local transformation, aligned the images with an average error of 2 mm but was not reliable for thermal images. More generally, the suggested registration method and the preprocesses necessary before fusion (plant mask erosion, pixel intensity averaging) would depend on the application. As a consequence, the main output of this study was to identify four registration-fusion strategies: (i) the REAL-TIME strategy solely based on the cameras’ positions, (ii) the FAST strategy suitable for all types of images tested, (iii) and (iv) the ACCURATE and HIGHLY ACCURATE strategies handling local distortion but unable to deal with images of very different natures. These suggestions are, however, limited to the methods compared in this study. Further research should investigate how recent cutting-edge registration methods would perform on the specific case of wheat canopy.

28 January 2022 in Plant Phenomics
Verified
Journal Article
Open access
PDF file
ACalexis carlier
alexis carlier
Sébastien DandrifosseSébastien Dandrifosse
Sébastien Dandrifosse
BDBenjamin Dumont
Benjamin Dumont
BMBenoît Mercatoris
Benoît Mercatoris
The automatic segmentation of ears in wheat canopy images is an important step to measure ear density or extract relevant plant traits separately for the different organs. Recent deep learning algorithms appear as promising tools to accurately detect ears in a wide diversity of conditions. However, they remain complicated to implement and necessitate a huge training database. This paper is aimed at proposing an easy and quick to train and robust alternative to segment wheat ears from heading to maturity growth stage. The tested method was based on superpixel classification exploiting features from RGB and multispectral cameras. Three classifiers were trained with wheat images acquired from heading to maturity on two cultivars at different levels of fertilizer. The best classifier, the support vector machine (SVM), yielded satisfactory segmentation and reached 94 accuracy. However, the segmentation at the pixel level could not be assessed only by the superpixel classification accuracy. For this reason, a second assessment method was proposed to consider the entire process. A simple graphical tool was developed to annotate pixels. The strategy was to annotate a few pixels per image to be able to quickly annotate the entire image set, and thus account for very diverse conditions. Results showed a lesser segmentation score (F1-score) for the heading and flowering stages and for the zero nitrogen input object. The methodology appeared appropriate for further work on the growth dynamics of the different wheat organs and in the frame of other segmentation challenges.

6 August 2025 in Plant Phenomics
Verified
Journal Article
Open access
ZWZijian Wang
Zijian Wang
RZRadek Zenkl
Radek Zenkl
LGLatifa Greche
Latifa Greche
BSBenoit De Solan
Benoit De Solan
LSLucas Bernigaud Samatan
Lucas Bernigaud Samatan
AHAndreas Hund
Andreas Hund
Computer vision is increasingly used in farmers' fields and agricultural experiments to quantify important traits. Imaging setups with a sub-millimeter ground sampling distance enable the detection and tracking of plant features, including size, shape, and colour. Although today's AI-driven foundation models segment almost any object in an image, they still fail for complex plant canopies. To improve model performance, the global wheat dataset consortium assembled a diverse set of images from experiments around the globe. After the head detection dataset (GWHD), the new dataset targets a full semantic segmentation (GWFSS) of organs (leaves, stems and spikes) covering all developmental stages. Images were collected by 11 institutions using a wide range of imaging setups. Two datasets are provided: i) a set of 1096 diverse images in which all organs were labelled at the pixel level, and (ii) a dataset of 52,078 images without annotations available for additional training. The labelled set was used to train segmentation models based on DeepLabV3Plus and Segformer. Our Segformer model performed slightly better than DeepLabV3Plus with a mIOU for leaves and spikes of ca. 90 ​%. However, the precision for stems with 54 ​% was rather lower. The major advantages over published models are: i) the exclusion of weeds from the wheat canopy, ii) the detection of all wheat features including necrotic and senescent tissues and its separation from crop residues. This facilitates further development in classifying healthy vs. unhealthy tissue to address the increasing need for accurate quantification of senescence and diseases in wheat canopies.