Jun Yang

Prof. Dr. Jun Yang

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Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 September 2014 in Molecular Physics
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Journal Article
Closed access
Yihan ShaoYihan Shao
Yihan Shao
ZGZhengting Gan
Zhengting Gan
EEEvgeny Epifanovsky
Evgeny Epifanovsky
AGAndrew T.B. Gilbert
Andrew T.B. Gilbert
MWMichael Wormit
Michael Wormit
MHMartin Head-Gordon
Martin Head-Gordon
A summary of the technical advances that are incorporated in the fourth major release of the Q-Chem quantum chemistry program is provided, covering approximately the last seven years. These include developments in density functional theory methods and algorithms, nuclear magnetic resonance (NMR) property evaluation, coupled cluster and perturbation theories, methods for electronically excited and open-shell species, tools for treating extended environments, algorithms for walking on potential surfaces, analysis tools, energy and electron transfer modelling, parallel computing capabilities, and graphical user interfaces. In addition, a selection of example case studies that illustrate these capabilities is given. These include extensive benchmarks of the comparative accuracy of modern density functionals for bonded and non-bonded interactions, tests of attenuated second order Møller–Plesset (MP2) methods for intermolecular interactions, a variety of parallel performance benchmarks, and tests of the accuracy of implicit solvation models. Some specific chemical examples include calculations on the strongly correlated Cr2 dimer, exploring zeolite-catalysed ethane dehydrogenation, energy decomposition analysis of a charged ter-molecular complex arising from glycerol photoionisation, and natural transition orbitals for a Frenkel exciton state in a nine-unit model of a self-assembling nanotube.

9 July 2020 in The Journal of Chemical Physics
Verified
Journal Article
Closed access
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QSQiming Sun
Qiming Sun
XZXing Zhang
Xing Zhang
SBSamragni Banerjee
Samragni Banerjee
PBPeng Bao
Peng Bao
MBMarc Barbry
Marc Barbry
GCGarnet Kin-Lic Chan
Garnet Kin-Lic Chan
PySCF is a Python-based general-purpose electronic structure platform that supports first-principles simulations of molecules and solids as well as accelerates the development of new methodology and complex computational workflows. This paper explains the design and philosophy behind PySCF that enables it to meet these twin objectives. With several case studies, we show how users can easily implement their own methods using PySCF as a development environment. We then summarize the capabilities of PySCF for molecular and solid-state simulations. Finally, we describe the growing ecosystem of projects that use PySCF across the domains of quantum chemistry, materials science, machine learning, and quantum information science.

15 January 2015 in The Journal of Chemical Physics
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Journal Article
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RORoberto Olivares-Amaya
Roberto Olivares-Amaya
WHWeifeng Hu
Weifeng Hu
NNNaoki Nakatani
Naoki Nakatani
SSSandeep Sharma
Sandeep Sharma
JYJun Yang
Jun Yang
GCGarnet Kin-Lic Chan
Garnet Kin-Lic Chan
The ab-initio density matrix renormalization group (DMRG) is a tool that can be applied to a wide variety of interesting problems in quantum chemistry. Here, we examine the density matrix renormalization group from the vantage point of the quantum chemistry user. What kinds of problems is the DMRG well-suited to? What are the largest systems that can be treated at practical cost? What sort of accuracies can be obtained, and how do we reason about the computational difficulty in different molecules? By examining a diverse benchmark set of molecules: π-electron systems, benchmark main-group and transition metal dimers, and the Mn-oxo-salen and Fe-porphine organometallic compounds, we provide some answers to these questions, and show how the density matrix renormalization group is used in practice.

8 August 2014 in Science
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Journal Article
Closed access
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JYJun Yang
Jun Yang
WHWeifeng Hu
Weifeng Hu
DUDenis Usvyat
Denis Usvyat
DMDevin Matthews
Devin Matthews
MSMartin Schütz
Martin Schütz
GCGarnet Kin-Lic Chan
Garnet Kin-Lic Chan
Working out how to pack benzene in silico: Many organic compounds crystallize in several different energetically similar packing arrangements, or polymorphs. This complicates processes such as drug formulation that rely on reproducible crystallization. Yang et al. have now achieved the long-standing goal of calculating a crystal packing arrangement from first principles to an accuracy that can distinguish polymorphs (see the Perspective by Price). They used benzene as a prototypical test case and applied quantum chemical methods that improve estimates of multibody interactions. The results bode well for future applications of theory to optimization of crystallization protocols. Science , this issue p. 640 ; see also p. 619

10 April 2012 in The Journal of Chemical Physics
Verified
Journal Article
Open access
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JYJun Yang
Jun Yang
GCGarnet Kin-Lic Chan
Garnet Kin-Lic Chan
FMFrederick R. Manby
Frederick R. Manby
MSMartin Schütz
Martin Schütz
HWHans-Joachim Werner
Hans-Joachim Werner
We extend the orbital-specific-virtual tensor factorization, introduced for local Møller-Plesset perturbation theory in Ref. [J. Yang, Y. Kurashige, F. R. Manby and G. K. L. Chan, J. Chem. Phys. 134, 044123 (2011)10.1063/1.3528935], to local coupled cluster singles and doubles theory (OSV-LCCSD). The method is implemented by modifying an efficient projected-atomic-orbital local coupled cluster program (PAO-LCCSD) described recently, [H.-J. Werner and M. Schütz, J. Chem. Phys. 135, 144116 (2011)10.1063/1.3641642]. By comparison of both methods we find that the compact representation of the amplitudes in the OSV approach affords various advantages, including smaller computational time requirements (for comparable accuracy), as well as a more systematic control of the error through a single energy threshold. Overall, the OSV-LCCSD approach together with an MP2 correction yields small domain errors in practical calculations. The applicability of the OSV-LCCSD is demonstrated for molecules with up to 73 atoms and realistic basis sets (up to 2334 basis functions).

1 September 2017 in Chemical Physics Letters
Verified
Journal Article
Closed access
QSQiming Sun
Qiming Sun
JYJun Yang
Jun Yang
GCGarnet Kin-Lic Chan
Garnet Kin-Lic Chan