David Merkler

Prof. David Merkler

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Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 July 2008 in Drug Discovery Today
Verified
Journal Article
Closed access
EFEmma K. Farrell
Emma K. Farrell
DMDavid Merkler
David Merkler

1 May 2016 in Journal of Lipid Research
Verified
Journal Article
Open access
PDF file
KJKristen A. Jeffries
Kristen A. Jeffries
DDDaniel R. Dempsey
Daniel R. Dempsey
EFEmma K. Farrell
Emma K. Farrell
RARyan L. Anderson
Ryan L. Anderson
GGGabrielle J. Garbade
Gabrielle J. Garbade
DMDavid Merkler
David Merkler
Long-chain fatty acid amides are signaling lipids found in mammals and other organisms; however, details of the metabolic pathways for the N-acylglycines and primary fatty acid amides have remained elusive. Heavy-labeled precursor and subtraction lipidomic experiments in mouse neuroblastoma N18TG2 cells, a model cell line for the study of fatty acid amide metabolism, establish the biosynthetic pathways for the N-acylglycines and the primary fatty acid amides. We provide evidence that the N-acylglycines are formed by a long-chain specific glycine-conjugating enzyme, glycine N-acyltransferase like 3 (GLYATL3). siRNA knockdown of GLYATL3 in the N18TG2 cells resulted in a decrease in the levels of the N-acylglycines and the primary fatty acid amides. This is the first report of an enzyme responsible for long-chain N-acylglycine production in cellula. The production of the primary fatty acid amides in N18 TG2 cells was reported to occur by the oxidative cleavage of the N-acylglycines, as catalyzed by peptidylglycine α-amidating monooxygenase (PAM). siRNA knockdown of PAM resulted in an accumulation of [13C18]-N-oleoylglycine and decreased levels of [13C18]-oleamide when the N18TG2 cells are grown in the presence of [13C18]-oleic acid. The addition of [1-13C]-palmitate to the N18TG2 cell growth media leads to the production of a family of [1-13C]-palmitoylated fatty acid amides, consistent with the biosynthetic pathways detailed herein.

1 February 2012 in Journal of Lipid Research
Verified
Journal Article
Open access
EFEmma K. Farrell
Emma K. Farrell
YCYuden Chen
Yuden Chen
MBMuna Barazanji
Muna Barazanji
KJKristen A. Jeffries
Kristen A. Jeffries
FCFelipe Cameroamortegui
Felipe Cameroamortegui
DMDavid Merkler
David Merkler
Primary fatty acid amides (PFAM) are important signaling molecules in the mammalian nervous system, binding to many drug receptors and demonstrating control over sleep, locomotion, angiogenesis, and many other processes. Oleamide is the best-studied of the primary fatty acid amides, whereas the other known PFAMs are significantly less studied. Herein, quantitative assays were used to examine the endogenous amounts of a panel of PFAMs, as well as the amounts produced after incubation of mouse neuroblastoma N(18)TG(2) and sheep choroid plexus (SCP) cells with the corresponding fatty acids or N-tridecanoylethanolamine. Although five endogenous primary amides were discovered in the N(18)TG(2) and SCP cells, a different pattern of relative amounts were found between the two cell lines. Higher amounts of primary amides were found in SCP cells, and the conversion of N-tridecanoylethanolamine to tridecanamide was observed in the two cell lines. The data reported here show that the N(18)TG(2) and SCP cells are excellent model systems for the study of PFAM metabolism. Furthermore, the data support a role for the N-acylethanolamines as precursors for the PFAMs and provide valuable new kinetic results useful in modeling the metabolic flux through the pathways for PFAM biosynthesis and degradation.

18 November 2014 in Biochemistry
Verified
Journal Article
Open access
DDDaniel R. Dempsey
Daniel R. Dempsey
KJKristen A. Jeffries
Kristen A. Jeffries
JBJason D. Bond
Jason D. Bond
ACAnne-Marie Carpenter
Anne-Marie Carpenter
SRSantiago Rodriguez-Ospina
Santiago Rodriguez-Ospina
DMDavid Merkler
David Merkler
Arylalkylamine N-acetyltransferase (AANAT) catalyzes the penultimate step in the biosynthesis of melatonin and other N-acetylarylalkylamides from the corresponding arylalkylamine and acetyl-CoA. The N-acetylation of arylalkylamines is a critical step in Drosophila melanogaster for the inactivation of the bioactive amines and the sclerotization of the cuticle. Two AANAT variants (AANATA and AANATB) have been identified in D. melanogaster, in which AANATA differs from AANATB by the truncation of 35 amino acids from the N-terminus. We have expressed and purified both D. melanogaster AANAT variants (AANATA and AANATB) in Escherichia coli and used the purified enzymes to demonstrate that this N-terminal truncation does not affect the activity of the enzyme. Subsequent characterization of the kinetic and chemical mechanism of AANATA identified an ordered sequential mechanism, with acetyl-CoA binding first, followed by tyramine. We used a combination of pH–activity profiling and site-directed mutagenesis to study prospective residues believed to function in AANATA catalysis. These data led to an assignment of Glu-47 as the general base in catalysis with an apparent pKa of 7.0. Using the data generated for the kinetic mechanism, structure–function relationships, pH–rate profiles, and site-directed mutagenesis, we propose a chemical mechanism for AANATA.

17 January 2014 in FEBS Letters
Verified
Journal Article
Open access
DDDaniel R. Dempsey
Daniel R. Dempsey
KJKristen A. Jeffries
Kristen A. Jeffries
RARyan L. Anderson
Ryan L. Anderson
ACAnne-Marie Carpenter
Anne-Marie Carpenter
SOSantiago Rodriquez Opsina
Santiago Rodriquez Opsina
DMDavid Merkler
David Merkler
Arylalkylamine N‐acyltransferase‐like 2 2 (AANATL2) from Drosophila melanogaster was expressed and shown to catalyze the formation of long‐chain N‐acylserotonins and N‐acydopamines. Subsequent identification of endogenous amounts of N‐acylserotonins and colocalization of these fatty acid amides and AANATL2 transcripts gives supporting evidence that AANATL2 has a role in the biosynthetic formation of these important cell signalling lipids.

17 March 2014 in FEBS Letters
Verified
Journal Article
Closed access
KJKristen A. Jeffries
Kristen A. Jeffries
DDDaniel R. Dempsey
Daniel R. Dempsey
ABAnita L. Behari
Anita L. Behari
RARyan L. Anderson
Ryan L. Anderson
DMDavid Merkler
David Merkler