Eman Khalaf

Prof. Dr. Eman Khalaf

Faculty of Pharmacy - Damanhour University
orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 February 2018 in Frontiers in Microbiology
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Eman KhalafEman Khalaf
Eman Khalaf
MRManish Raizada
Manish Raizada
The cucurbit vegetables, including cucumbers, melons and pumpkins, have been cultivated for thousands of years without fungicides. However, their seed germination stage is prone to be infected by soil-borne fungal and oomycete pathogens. Endophytes are symbionts that reside inside plant tissues including seeds. Seed endophytes are founders of the juvenile plant microbiome and can promote host defense at seed germination and later stages. We previously isolated 169 bacterial endophytes associated with seeds of diverse cultivated cucurbits. We hypothesized that these endophytes can antagonize major fungal and oomycete pathogens. Here we tested the endophytes for in vitro antagonism (dual culture assays) against important soil-borne pathogens (Rhizoctonia solani, Fusarium graminearum, Phytophthora capsici, Pythium aphanideratum). The endophytes were also assayed in planta (leaf disk and detached leaf bioassays) for antagonism against a foliar pathogen of global importance, Podosphaera fuliginea, the causative agent of cucurbit powdery mildew. The endophytes were further tested in vitro for secretion of volatile organic compounds (VOCs) known to induce plant defense. Extracellular ribonuclease activity was also tested, as a subset of pathogenesis-related (PR) proteins of plant hosts implicated in suppression of fungal pathogens, displays ribonuclease activity. An unexpected majority of the endophytes (70%, 118/169) exhibited antagonism to the five phytopathogens, of which 68% (50/73) of in vitro antagonists belong to the genera Bacillus and Paenibacillus. All Lactococcus and Pantoea endophytes exhibited anti-oomycete activity. However, amongst the most effective inoculants against Podosphaera fuliginea were Pediococcus and Pantoea endophytes. Interestingly, 67% (113/169) of endophytes emitted host defense inducing VOCs (acetoin/diacetyl) and 62% (104/169) secreted extracellular ribonucleases in vitro, respectively. These results show that seeds of cultivated cucurbits package microbes with significant disease-suppression potential. As seeds can act as vectors for genetic transmission of endophytes across host generations, it is interesting to hypothesize whether humans, when selecting seeds of healthy hosts, may have inadvertently selected for disease-suppressing seed endophytes. As the majority of pathogen-suppressing endophytes belong to Bacillus and Paenibacillus, and since Bacilli are widely used as commercial biocontrol agents of vegetables, we propose that these agents are mimicking the ecological niche established by their endophytic cousins.

27 June 2016 in BMC Microbiology
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Eman KhalafEman Khalaf
Eman Khalaf
MRManish Raizada
Manish Raizada
Endophytes are microbes that colonize plant internal tissues without causing disease. In particular, seed-associated endophytes may be vectors for founder microbes that establish the plant microbiome, which may subsequently contribute beneficial functions to their host plants including nutrient acquisition and promotion of plant growth. The Cucurbitaceae family of gourds (e.g., cucumbers, melons, pumpkin, squash), including its fruits and seeds, is widely consumed by humans. However, there is limited data concerning the taxonomy and functions of seed-associated endophytes across the Cucurbitaceae family. Here, bacteria from surface-sterilized seeds of 21 curcurbit varieties belonging to seven economically important species were cultured, classified using 16S rRNA gene sequencing, and subjected to eight in vitro functional tests. In total, 169 unique seed-associated bacterial strains were cultured from selected cucurbit seeds. Interestingly, nearly all strains belonged to only two phyla (Firmicutes, Proteobacteria) and only one class within each phyla (Bacilli, γ-proteobacteria, respectively). Bacillus constituted 50 % of all strains and spanned all tested cucurbit species. Paenibacillus was the next most common genus, while strains of Enterobacteriaceae and lactic acid bacteria were also cultured. Phylogenetic trees showed limited taxonomic clustering of strains by host species. Surprisingly, 33 % of strains produced the plant hormone, indole-3-acetic acid (auxin), known to stimulate the growth of fruits/gourds and nutrient-acquiring roots. The next most common nutrient acquisition traits in vitro were (in rank order): nitrogen fixation/N-scavenging, phosphate solubilisation, siderophore secretion, and production of ACC deaminase. Secretion of extracellular enzymes required for nutrient acquisition, endophyte colonization and/or community establishment were observed. Bacillus strains had the potential to contribute all tested functional traits to their hosts. The seeds of economically important cucurbits tested in this study have a culturable core microbiota consisting of Bacillus species with potential to contribute diverse nutrient acquisition and growth promotion activities to their hosts. These microbes may lead to novel seed inoculants to assist sustainable food production. Given that cucurbit seeds are consumed by traditional societies as a source of tryptophan, the precursor for auxin, we discuss the possibility that human selection inadvertently facilitated auxin-mediated increases in gourd size.

8 April 2021 in Pharmaceuticals
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Sameh SaberSameh Saber
Sameh Saber
Eslam Abd El-FattahEslam Abd El-Fattah
Eslam Abd El-Fattah
GYGalal Yahya
Galal Yahya
NGNaglaa A. Gobba
Naglaa A. Gobba
AMAbdalkareem Omar Maghmomeh
Abdalkareem Omar Maghmomeh
AEAhmed El-Baz
Ahmed El-Baz
Inflammasome targeting and controlling dysbiosis are promising therapeutic approaches to control ulcerative colitis. This report is the first to investigate the mechanisms underlying the coloprotective effects of rosuvastatin and Lactobacillus and their combined therapy on dextran sodium sulfate (DSS)-induced colitis in high-fat diet (HFD)-fed rats. Our results demonstrate the aggravation of intestinal inflammation as a consequence of an HFD following DSS administration. An association between dyslipidemia, LDL oxidation, CD36 expression, ROS generation, thioredoxin-interacting protein (TXNIP) upregulation, and NLRP3 inflammasome activation was demonstrated by DSS exposure in HFD-fed rats. We demonstrated that rosuvastatin/Lactobacillus significantly suppressed the DSS/HFD-induced increase in colon weight/length ratio, DAI, MDI, and myeloperoxidase, as well as corrected dysbiosis and improved histological characteristics. Additionally, caspase-1 activity and IL-1β-driven pyroptotic activity was significantly reduced. Rosuvastatin/Lactobacillus showed prominent anti-inflammatory effects as revealed by the IL-10/IL-12 ratio and the levels of TNF-α and IL-6. These latter effects may be attributed to the inhibition of phosphorylation-induced activation of NF-κB and a concomitant reduction in the expression of NLRP3, pro-IL-1β, and pro-IL-18. Furthermore, rosuvastatin/Lactobacillus reduced Ox-LDL-induced TXNIP and attenuated the inflammatory response by inhibiting NLRP3 inflammasome assembly. To conclude, rosuvastatin/Lactobacillus offers a safe and effective strategy for the management of ulcerative colitis.

8 April 2022 in Antibiotics
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RGReham M. Goda
Reham M. Goda
AEAhmed El-Baz
Ahmed El-Baz
Eman KhalafEman Khalaf
Eman Khalaf
NANada Alharbi
Nada Alharbi
TETarek A. Elkhooly
Tarek A. Elkhooly
MSMohamed M. Shohayeb
Mohamed M. Shohayeb
Urinary catheters are commonly associated with urinary tract infections. This study aims to inhibit bacterial colonisation and biofilm of urinary tract catheters. Silicon catheter pieces were varnished with green silver nanoparticles (AgNPs) using Pistacia lentiscus mastic to prevent bacterial colonisation. Pomegranate rind extract was used to synthesize AgNPs. AgNPs were characterized by UV-Vis spectroscopy, X-ray crystallography, and transmission electron microscopy (TEM). Results obtained revealed that the size of most AgNPs ranged between 15–25 nm and they took crystallised metal and oxidised forms. The amounts of released silver ions from 1 cm pieces of catheters coated with AgNPs were estimated for five days and ranged between 10.82 and 4.8 µg. AgNPs coated catheters significantly inhibited the colonisation of catheters by antibiotic-resistant clinical Gram-positive (Staphylococcus epidermidis and Staphylococcus aureus) and Gram-negative (Escherichia coli, Klebsiella pneumoniae, Proteus mirabilis, and Pseudomonas aeruginosa) bacteria. AgNPs-varnish was more active against Gram-negative bacteria than Gram-positive bacteria. The significant inhibitory effect of coated catheters lasted for 72 h for both Gram-positive and Gram-negative bacteria. Varnishing catheters with AgNPs may help to prevent bacterial colonisation and infections.

1 January 2020 in Linguistic Inquiry
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Journal Article
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BBBenjamin Bruening
Benjamin Bruening
Eman KhalafEman Khalaf
Eman Khalaf
We reexamine cases of coordinated elements that do not match in syntactic category. We show that these fall into two types. The first type includes predicates, modifiers in the clausal domain, and such modifiers apparently coordinated with arguments. We argue that these do not actually involve coordination of unlike categories. The second type involves coordinated arguments of different categories. With this type, unlike the first, noninitial conjuncts may violate selectional restrictions. To account for these violations, researchers have typically posited a special status for the first conjunct in a coordinate structure, such that it alone can determine the category of the coordinate phrase. We show that such accounts are untenable. First, the final conjunct can be what matters for selection, if it is closest to the selecting or selected element. Second, category mismatches are not free, but are extremely limited and exactly match those observed in ellipsis and displacement. This calls for a uniform account of these mismatches, not one specific to coordination. We spell out such an analysis, in which displacement, ellipsis, and coordination permit certain categories to behave as certain other categories through their effects on null syntactic heads.

4 September 2018 in Journal of Linguistics
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BBBenjamin Bruening
Benjamin Bruening
Eman KhalafEman Khalaf
Eman Khalaf
The syntax literature has overwhelmingly adopted the view that Condition C reconstruction takes place in wh-chains for R-expressions contained within arguments, but not within adjuncts of fronted wh-phrases. At the same time, this empirical picture has been questioned by various authors. We undertake a series of grammaticality surveys using Amazon Mechanical Turk in an attempt to clarify the empirical picture regarding reconstruction for Binding Condition C. We find absolutely no evidence of an argument–adjunct distinction in reconstruction for Binding Condition C. Neither arguments nor adjuncts reconstruct for Condition C. We suggest that those speakers who report such a contrast (linguists, primarily) are following a pragmatic bias, and not Condition C. While we do not find reconstruction of dependents of fronted NPs for Binding Condition C, we do find reconstruction of fronted PPs. That is, the NP complement of a fronted P must reconstruct for Binding Condition C. The literature also finds reconstruction of NP complements of verbs and adjectives. This means that fronted Ns are special in not requiring reconstruction of their arguments and adjuncts. We suggest that, syntactically, arguments of Ns are treated as adjuncts: semantic arguments simply adjoin in the same manner as true adjuncts. Syntactic adjuncts can be left out of lower copies in chains, something that we suggest follows from a left-to-right syntactic derivation plus an economy condition on copying.