No reliable evidence summarizes the current state of the floristic and taxonomic knowledge of the Egyptian flora since Boulos (2009). In this study, we critically revised and updated the checklist of native vascular plants of Egypt. The checklist comprises 2,499 native and naturalized vascular plant taxa (1,676 species and 552 infraspecific taxa) from 119 families and 796 genera including 20 ferns, 6 gymnosperms, and 2,473 angiosperms. In the angiosperms, Asteraceae, Poaceae, Fabaceae, Amaranthaceae, Caryophyllaceae and Brassicaceae show the greatest species richness (> 100 taxa). The Sinai Peninsula contains the richest flora with 1,473 taxa. Based on our critical revisions, names of 32 families, 41 genera, and 409 species have been changed in comparison to the latest checklist. In addition, 52 plant species are excluded from Flora of Egypt in this work, while one new family (Cannabaceae), 23 new genera, 189 new species, 61 new subspecies, and 41 new varieties are added. Concerning the species endemism; authors adopted 74 endemic taxa restricted only to Egypt, and 207 near- endemic taxa that co- occur in adjacent countries. This updating checklist will serve as an essential background and reference for scientists and students interested in the Egyptian flora, and also for conservation projects in Egypt.