Rıza Dervişoğlu

Dr. Rıza Dervişoğlu

orcid

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 July 2021 in Nature Communications
Verified
Journal Article
Open access
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PCPijush Chakraborty
Pijush Chakraborty
GRGwladys Rivière
Gwladys Rivière
SLShu Liu
Shu Liu
AOAlain Ibáñez de Opakua
Alain Ibáñez de Opakua
RDRıza Dervişoğlu
Rıza Dervişoğlu
MZMarkus Zweckstetter
Markus Zweckstetter
Pathological aggregation of the protein tau into insoluble aggregates is a hallmark of neurodegenerative diseases. The emergence of disease-specific tau aggregate structures termed tau strains, however, remains elusive. Here we show that full-length tau protein can be aggregated in the absence of co-factors into seeding-competent amyloid fibrils that sequester RNA. Using a combination of solid-state NMR spectroscopy and biochemical experiments we demonstrate that the co-factor-free amyloid fibrils of tau have a rigid core that is similar in size and location to the rigid core of tau fibrils purified from the brain of patients with corticobasal degeneration. In addition, we demonstrate that the N-terminal 30 residues of tau are immobilized during fibril formation, in agreement with the presence of an N-terminal epitope that is specifically detected by antibodies in pathological tau. Experiments in vitro and in biosensor cells further established that co-factor-free tau fibrils efficiently seed tau aggregation, while binding studies with different RNAs show that the co-factor-free tau fibrils strongly sequester RNA. Taken together the study provides a critical advance to reveal the molecular factors that guide aggregation towards disease-specific tau strains.

12 December 2016 in The Journal of Physical Chemistry Letters
Verified
Journal Article
Closed access
WFWouter M. J. Franssen
Wouter M. J. Franssen
SESverre G. D. van Es
Sverre G. D. van Es
RDRıza Dervişoğlu
Rıza Dervişoğlu
GWGilles A. de Wijs
Gilles A. de Wijs
AKArno P. M. Kentgens
Arno P. M. Kentgens

18 May 2021 in Biomolecules
Verified
Journal Article
Open access
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ENEvgeny Nimerovsky
Evgeny Nimerovsky
KMKumar Tekwani Movellan
Kumar Tekwani Movellan
XZXizhou Zhang
Xizhou Zhang
MFMarcel C. Forster
Marcel C. Forster
ENEszter Najbauer
Eszter Najbauer
LALoren B Andreas
Loren B Andreas
The available magnetic field strength for high resolution NMR in persistent superconducting magnets has recently improved from 23.5 to 28 Tesla, increasing the proton resonance frequency from 1 to 1.2 GHz. For magic-angle spinning (MAS) NMR, this is expected to improve resolution, provided the sample preparation results in homogeneous broadening. We compare two-dimensional (2D) proton detected MAS NMR spectra of four membrane proteins at 950 and 1200 MHz. We find a consistent improvement in resolution that scales superlinearly with the increase in magnetic field for three of the four examples. In 3D and 4D spectra, which are now routinely acquired, this improvement indicates the ability to resolve at least 2 and 2.5 times as many signals, respectively.

30 June 2014 in The Journal of Physical Chemistry Letters
Verified
Journal Article
Closed access
FBFrédéric Blanc
Frédéric Blanc
LSLuke Sperrin
Luke Sperrin
DLDaniel Lee
Daniel Lee
RDRıza Dervişoğlu
Rıza Dervişoğlu
YYYoshihiro Yamazaki
Yoshihiro Yamazaki
CGClare P. Grey
Clare P. Grey

14 September 2022 in Nature Communications
Verified
Journal Article
Open access
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LALeif Antonschmidt
Leif Antonschmidt
DMDirk Matthes
Dirk Matthes
RDRıza Dervişoğlu
Rıza Dervişoğlu
BFBenedikt Frieg
Benedikt Frieg
CDChristian Dienemann
Christian Dienemann
LALoren B Andreas
Loren B Andreas
Aggregation of amyloidogenic proteins is a characteristic of multiple neurodegenerative diseases. Atomic resolution of small molecule binding to such pathological protein aggregates is of interest for the development of therapeutics and diagnostics. Here we investigate the interaction between α-synuclein fibrils and anle138b, a clinical drug candidate for disease modifying therapy in neurodegeneration and a promising scaffold for positron emission tomography tracer design. We used nuclear magnetic resonance spectroscopy and the cryogenic electron microscopy structure of α-synuclein fibrils grown in the presence of lipids to locate anle138b within a cavity formed between two β-strands. We explored and quantified multiple binding modes of the compound in detail using molecular dynamics simulations. Our results reveal stable polar interactions between anle138b and backbone moieties inside the tubular cavity of the fibrils. Such cavities are common in other fibril structures as well.

14 May 2021 in Science Advances
Verified
Journal Article
Open access
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LALeif Antonschmidt
Leif Antonschmidt
RDRıza Dervişoğlu
Rıza Dervişoğlu
VSVrinda Sant
Vrinda Sant
KMKumar Tekwani Movellan
Kumar Tekwani Movellan
IMIngo Mey
Ingo Mey
CGChristian Griesinger
Christian Griesinger
Aggregation intermediates of Parkinson’s disease–related α-synuclein on liposomes are structurally characterized by NMR.