Md Saifur Rahman

Dr. Md Saifur Rahman

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Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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Journal Article
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MRMd Saifur Rahman
Md Saifur Rahman
MAMD BADRUL ALAM
MD BADRUL ALAM
YKYoung Kyun Kim
Young Kyun Kim
MMMst Hur Madina
Mst Hur Madina
Ismail FlissIsmail Fliss
Ismail Fliss
Jin Cheol YooJin Cheol Yoo
Jin Cheol Yoo
In this study, we investigate the immunomodulatory effects of a novel antimicrobial peptide, YD1, isolated from Kimchi, in both in vitro and in vivo models. We establish that YD1 exerts its anti-inflammatory effects via up-regulation of the Nrf2 pathway, resulting in the production of HO-1, which suppresses activation of the NF-κB pathway, including the subsequent proinflammatory cytokines IL-1β, IL-6, and TNF-α. We also found that YD1 robustly suppresses nitric oxide (NO) and prostaglandin E2 (PGE2) production by down-regulating the expression of the upstream genes, iNOS and COX-2, acting as a strong antioxidant. Collectively, YD1 exhibits vigorous anti-inflammatory and antioxidant activity, presenting it as an interesting potential therapeutic agent.

16 October 2019 in Plant Molecular Biology
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MMMosammad Hur Madina
Mosammad Hur Madina
MRMd Saifur Rahman
Md Saifur Rahman
HZHuanquan Zheng
Huanquan Zheng
HGHugo Germain
Hugo Germain

6 June 2021 in Microorganisms
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MRMd Saifur Rahman
Md Saifur Rahman
MMMosammad Hur Madina
Mosammad Hur Madina
MPMélodie B. Plourde
Mélodie B. Plourde
Karen Goncalves dos SantosKaren Goncalves dos Santos
Karen Goncalves dos Santos
XHXiaoqiang Huang
Xiaoqiang Huang
HGHugo Germain
Hugo Germain
Melampsora larici-populina (Mlp) is a devastating pathogen of poplar trees, causing the defoliating poplar leaf rust disease. Genomic studies have revealed that Mlp possesses a repertoire of 1184 small secreted proteins (SSPs), some of them being characterized as candidate effectors. However, how they promote virulence is still unclear. This study investigates the candidate effector Mlp37347’s role during infection. We developed a stable Arabidopsis transgenic line expressing Mlp37347 tagged with the green fluorescent protein (GFP). We found that the effector accumulated exclusively at plasmodesmata (PD). Moreover, the presence of the effector at plasmodesmata favors enhanced plasmodesmatal flux and reduced callose deposition. Transcriptome profiling and a gene ontology (GO) analysis of transgenic Arabidopsis plants expressing the effector revealed that the genes involved in glucan catabolic processes are up-regulated. This effector has previously been shown to interact with glutamate decarboxylase 1 (GAD1), and in silico docking analysis supported the strong binding between Mlp37347 and GAD1 in this study. In infection assays, the effector promoted Hyalonoperospora arabidopsidis growth but not bacterial growth. Our investigation suggests that the effector Mlp37347 targets PD in host cells and promotes parasitic growth.

16 September 2020 in Biology
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MMMst Hur Madina
Mst Hur Madina
MRMd Saifur Rahman
Md Saifur Rahman
XHXiaoqiang Huang
Xiaoqiang Huang
Yang ZhangYang Zhang
Yang Zhang
HZHuanquan Zheng
Huanquan Zheng
HGHugo Germain
Hugo Germain
Melampsora larici-populina (Mlp), the causal agent of Populus leaf rust, secretes an array of effectors into the host through the haustorium to gain nutrients and suppress immunity. The precise mechanisms by which these effectors promote virulence remain unclear. To address this question, we developed a transgenic Arabidopsis line expressing a candidate effector, Mlp124357. Constitutive expression of the effector increased plant susceptibility to pathogens. A GxxxG motif present in Mlp124357 is required for its subcellular localization at the vacuolar membrane of the plant cell, as replacement of the glycine residues with alanines led to the delocalization of Mlp124357 to the nucleus and cytoplasm. We used immunoprecipitation and mass spectrometry (MS) to identify Mlp124357 interaction partners. Only one of the putative interaction partners knock-out line caused delocalization of the effector, indicating that Arabidopsis protein disulfide isomerase-11 (AtPDI-11) is required for the effector localization. This interaction was further confirmed by a complementation test, a yeast-two hybrid assay and a molecular modeling experiment. Moreover, localization results and infection assays suggest that AtPDI-11 act as a helper for Mlp124357. In summary, our findings established that one of Mlp effectors resides at the vacuole surface and modulates plant susceptibility.

26 August 2024 in Marine Drugs
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MRMd Saifur Rahman
Md Saifur Rahman
MAMD BADRUL ALAM
MD BADRUL ALAM
MNMarufa Naznin
Marufa Naznin
MMMst Hur Madina
Mst Hur Madina
SRS. M. Rafiquzzamam
S. M. Rafiquzzamam
This study aimed to assess the anti-inflammatory properties of a bioactive glutamic-alanine rich glycoprotein (GP) derived from Undaria pinnatifida on both LPS-stimulated RAW264.7 cells, peritoneal macrophages, and mouse models of carrageenan- and xylene-induced inflammation, investigating the underlying molecular mechanisms. In both in-vitro and in-vivo settings, GP was found to reduce the expression of inducible nitric oxide synthase (iNOS) and cyclooxygenase-2 (COX-2) while also inhibiting the production of nitric oxide (NO) and prostaglandin E2 (PGE2) in response to lipopolysaccharide (LPS) stimulation. GP treatment significantly impeded the nuclear translocation of the nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB) pathway by blocking the phosphorylation of IKKα and IκBα, leading to a reduction in proinflammatory cytokines such as tumor necrosis factor-α (TNF-α), interleukin-1β (IL-1β), and interleukin-6 (IL-6). Additionally, GP effectively inhibited the activation of mitogen-activated protein kinases (MAPKs), with specific inhibitors of p38 and extra-cellular signal regulated kinase (ERK) enhancing GP’s anti-inflammatory efficacy. Notably, GP administration at 10 mg/kg/day (p.o.) markedly reduced carrageenan-induced paw inflammation and xylene-induced ear edema by preventing the infiltration of inflammatory cells into targeted tissues. GP treatment also downregulated key inflammatory markers, including iNOS, COX-2, IκBα, and NF-κB, by suppressing the phosphorylation of p38 and ERK, thereby improving the inflammatory index in both carrageenan- and xylene-induced mouse models. These findings suggest that marine resources, particularly seaweeds like U. pinnatifida, could serve as valuable sources of natural anti-inflammatory proteins for the effective treatment of inflammation and related conditions.

29 August 2024 in bioRxiv
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MRMd Saifur Rahman
Md Saifur Rahman
MGMarie-Claire Goulet
Marie-Claire Goulet
DMDominique Michaud
Dominique Michaud
Molecular farming, which utilizes plants as biofactories for recombinant protein production, offers an innovative and cost-effective alternative to traditional expression systems. Despite its advantages, plant-based production faces challenges such as low transgene expression and protein instability. Recent studies have highlighted the potential of Nicotiana benthamiana axillary stem leaves to enhance protein yield. This study explored the development of N. benthamiana lines expressing TENGU without signal peptide (T-SP), a phytoplasma effector known to induce plant dwarfism and increase shoot growth. TENGU and other effectors, such as SAP05 and SAP11, were introduced to create phenotypic variations that favor recombinant protein production. This study aimed to optimize these transgenic lines for increased biomass and protein yields by leveraging vertical farming conditions for scalable production. The results demonstrated significant improvements in leaf number, biomass, and five times more soluble protein content in T-SP lines compared to control lines, suggesting a promising approach for efficient molecular farming.