Ahmet Buğra Aksel

Mr. Ahmet Buğra Aksel

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 June 2021 in Applied Sciences
Verified
Journal Article
Open access
PDF file
HSHasan Erdinç SELLİTEPE
Hasan Erdinç SELLİTEPE
JOJong Min Oh
Jong Min Oh
İDİnci Selin DOGAN
İnci Selin DOGAN
SYSercan Yildirim
Sercan Yildirim
AAAhmet Buğra Aksel
Ahmet Buğra Aksel
Hoon KimHoon Kim
Hoon Kim
Nineteen tosylated acyl hydrazone derivatives were synthesized, and their inhibitory activities against monoamine oxidases (MAOs), acetylcholinesterase (AChE), butyrylcholinesterase (BChE), and β-secretase (BACE-1) were evaluated. Compound 3o was the most potent inhibitor of MAO-A, with an IC50 value of 1.54 µM, followed by 3a (IC50 = 3.35 µM). A structural comparison with 3a indicated that the 3-F group in 3o increased its inhibitory activity against MAO-A. Compound 3s was the most potent inhibitor of MAO-B, with an IC50 value of 3.64 µM, followed by 3t (IC50 = 5.69 µM). The MAO-B inhibitory activity increased in the order of 3- > 4- > 2-NO2 groups in 3s, 3t, and 3r, respectively. All the compounds weakly inhibited AChE and BChE, which retained >50% residual activity at 10 µM, except for 3a, which inhibited BChE with an IC50 value of 16.1 µM. Interestingly, 3e, 3f, and 3n inhibited BACE-1 with IC50 values of 8.63, 9.92, and 8.47 µM, respectively, which were lower than the IC50 of the quercetin reference. Compounds 3o and 3s were found to be reversible competitive inhibitors of MAO-A and MAO-B, respectively, with Ki values of 0.35 ± 0.074 and 1.97 ± 0.65 µM, respectively. Moreover, compounds 3e, 3f, and 3n were effective BACE-1 inhibitors. The lead molecules were further investigated by molecular docking studies to elucidate the binding interactions with the target enzymes.

10 March 2026 in Drug Development Research
Verified
Journal Article
Open access
PDF file
AAAhmet Buğra Aksel
Ahmet Buğra Aksel
FOFikriye Ozgencil
Fikriye Ozgencil
FBFiliz Bakar-Ates
Filiz Bakar-Ates
HGHabibe Beyza Gunindi
Habibe Beyza Gunindi
AMAlberto Massarotti
Alberto Massarotti
GEGokcen Eren
Gokcen Eren
SIRT2, the cytoplasmic member of the sirtuin family, is generally acknowledged to promote cancer and contribute to the progression of various pathologies, including neurodegeneration, inflammation, obesity, and bacterial infection through the deacetylation of target substrates. In our previous efforts we identified potent and highly selective SIRT2 inhibitors with IC 50 values in the micromolar range. To further optimize their activity, we performed molecular docking‐guided design and subsequent synthesis of a series of novel 1,3,4‐thiadiazole derivatives. SIRT inhibitory screening identified that ST131 and ST132 achieved moderate inhibitory effects against SIRT2 with IC 50 values of 8.95 and 6.62 µM, respectively. Moreover, cellular assays in MCF‐7 breast cancer cells revealed that ST132 has shown an antiproliferative effect, as well as increased acetylated α‐tubulin expression levels, which is typically consistent with SIRT2 inhibition. In addition, docking studies were performed to analyze and rationalize the structural differences responsible for SIRT2 activity, shedding light on the importance of the interactions occurring at the entrance of the binding site. Finally, molecular mechanics‐generalized born surface area (MM‐GBSA) and molecular dynamics (MD) simulation approaches were conducted to verify the stability of ST132 in the complex with SIRT2.

15 August 2026 in ChemMedChem
Verified
Journal Article
Open access
HSHasan Erdinç SELLİTEPE
Hasan Erdinç SELLİTEPE
AAAhmet Buğra Aksel
Ahmet Buğra Aksel
EYEzgi Pehlivanlar Yavrucu
Ezgi Pehlivanlar Yavrucu
HZHilal Zıvalı
Hilal Zıvalı
Begüm Nurpelin Sağlık ÖzkanBegüm Nurpelin Sağlık Özkan
Begüm Nurpelin Sağlık Özkan
İDİnci Selin DOGAN
İnci Selin DOGAN
Monoamine oxidase (MAO) catalyzes the breakdown of neurotransmitters, including serotonin, dopamine, and norepinephrine. There are two isoforms of this enzyme: MAO‐A and MAO‐B. MAO efficacy is widely investigated in neurodegenerative (MAO‐B) and depressive (MAO‐A) disorders. Upon examining the structures of known inhibitors, it becomes evident that many share an aliphatic amine structure. Furthermore, the literature suggests that compounds with naphthalene skeletons, phenolic structures, and hydrazone moieties exhibit MAO inhibitory activity. In this study, 12 N ‐acylhydrazone derivatives ( 5a–f , 6a–f ) were designed using ligand‐based design methods. Based on biological activity studies, the MAO‐A inhibition of the compounds was calculated to be 0.073–2.54 µM, and the MAO‐B inhibition was 0.064–3.147 µM. Among all compounds, the derivatives bearing a naphthalene ring ( 5d – f , 6d – f ) exhibited MAO enzyme inhibition at levels comparable to those of the reference compounds. The compound with the highest activity, 6e , had IC 50 values of 0.073 ± 0.002 and 0.064 ± 0.002 µM against MAO‐A and MAO‐B, respectively. Due to its superior potency against human MAO‐B, enzyme kinetic studies were further conducted on compound 6e . Consequently, the pronounced inhibitory potency, reversible competitive kinetics, and favorable pharmacokinetic profile of compound 6e designate it as a strong lead candidate for advanced preclinical evaluation.

14 July 2026 in Chemical Biology & Drug Design
Verified
Journal Article
Closed access
PDF file
HSHasan Erdinç SELLİTEPE
Hasan Erdinç SELLİTEPE
AAAhmet Buğra Aksel
Ahmet Buğra Aksel
HZHilal Zıvalı
Hilal Zıvalı
EYEzgi Pehlivanlar Yavrucu
Ezgi Pehlivanlar Yavrucu
Begüm Nurpelin Sağlık ÖzkanBegüm Nurpelin Sağlık Özkan
Begüm Nurpelin Sağlık Özkan
KKKutsal Özcan Kosif
Kutsal Özcan Kosif

1 October 2026 in Journal of Molecular Structure
Verified
Journal Article
Closed access
TKTurgut Keles
Turgut Keles
DADidem Akkaya
Didem Akkaya
AÖArzu Özel
Arzu Özel
AAAhmet Buğra Aksel
Ahmet Buğra Aksel
TETuğba Eyi
Tuğba Eyi
ZBZekeriya Bıyıklıoğlu
Zekeriya Bıyıklıoğlu

5 October 2026 in Journal of Molecular Structure
Verified
Journal Article
Closed access
HSHasan Erdinç SELLİTEPE
Hasan Erdinç SELLİTEPE
BKBedia Kaymakçıoğlu
Bedia Kaymakçıoğlu
AAAhmet Buğra Aksel
Ahmet Buğra Aksel
BBBurak Barut
Burak Barut
AÖArzu Özel
Arzu Özel