Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapsho

Sediment microbial communities play essential roles in marine ecosystem functioning. Their study is crucial to understand how environmental conditions affect microbial diversity and biogeochemical cycles. The Venice Lagoon, one of the largest Adriatic transitional systems, is subjected to different natural and anthropogenic stressors. In this study, surface sediments microbial communities were finely characterized using 16S rRNA gene amplicon sequencing and metagenomics. Samples were collected seasonally in 2019 and 2020 at different sites within Lagoon sub-basins. Our results indicated a stable spatial distribution of the sediment microbiome: salinity, grain size, and total organic carbon were found to be important drivers in shaping prokaryotic communities, while temperature had a minor role. We detected high microbial diversity at all stations, mainly due to low abundant taxa: bacteria represented the vast majority of the reads (∼96.1%), with Woeseia the most abundant genus (∼4.4%). The metagenomic analysis highlighted significant differences among sites in terms of biogeochemical processes (e.g., C, N, Fe, and S metabolism), and cell-cell interaction strategies (e.g., mobilome, regulations and cell signaling). Chioggia, a sandy site subjected to marine influence, presented the highest abundance of ammonia-oxidizing archaeon Candidatus Nitrosopumilus, in accordance with the highest amount of ammonia monooxygenase subunit genes. At the same site, sulfate-reducing bacteria (Desulfobacteria and Desulfobacterales) and sulfur-related genes were found in lower abundance. Marghera and Tresse, the most polluted sites, showed higher abundance of sewage-related bacteria and antibiotic and toxic compound resistance genes. Furthermore, these sites showed higher amount of genes related to cell-cell interaction, such as pathogenicity islands, transposable-elements, and biofilm formation. Our findings highlighted that sediment features and human-related activities have profound and long-term impacts on the surface sediment microbial communities of the Venice Lagoon.

The role of marine ice-nucleating particles (INPs) in modifying clouds and radiation balance over oceans is uncertain. While recent studies have advanced our understanding of the abundance of marine INPs, characterizing their sources and composition remains a challenge. INP concentrations above oceans are typically low, sometimes extraordinarily so, but there is evidence of elevated levels associated with phytoplankton blooms. Mesocosm experiments have shown that ice-nucleating entities (INEs, which include discrete particles as well as ice-nucleating monolayers) are produced, and INP emissions raised, in the decay phase following bloom collapse. To test if INE production depends upon phytoplankton type, we added dead particulate biomass of a green alga (Nannochloris atomus), a diatom (Skeletonema marinoi) and a cyanobacterium (Prochlorococcus marinus) to a miniature Marine Aerosol Reference Tank filled with seawater. As decomposition progressed, heterotrophic bacteria initially increased and plateaued, then declined, coinciding with an increase in heterotrophic nanoflagellates (HNF) and viruses. Enzyme activities typically increased over several days before plateauing or decreasing, while humic-like substances (HULIS) steadily accumulated. INEs in the seawater peaked 3–5 days after each detritus addition, increasing ∼10- to ∼20-fold. INE concentration was closely correlated with HNF counts, viruses and the concentration of HULIS, but not with bacteria or enzyme activities. Newly-fabricated INEs were organic, primarily heat stable (95 °C), and varied in size. INP concentrations in sea spray aerosol (SSA) tended to peak shortly before the peak of INEs in the seawater, at 4-, 35- and 15-fold higher than at the start in the N. atomus, S. marinoi, and P. marinus incubations, respectively. Using data from the P. marinus incubation, we were able to provide the first estimate of INP enrichment in SSA (over its concentration in the water): it was initially ∼200× for the fresh seawater and increased further after the addition of the P. marinus inoculum. We also tested if a simple nutrient mix (bovine serum albumin (BSA) and three monosaccharides) could stimulate INP production: INEs in the seawater changed little, but INP emissions fell abruptly immediately upon BSA addition due to it forming a monolayer which displaced the sea surface microlayer (SML). These experiments revealed that INE production in the decay phase of a phytoplankton bloom requires the addition of a natural, complex substrate to initiate a realistic succession of decomposers, and that INP emissions are further controlled by their concentration in the SML and, indirectly, by the impact of SML composition upon jet and film drop production.