Stefan Kochanek

Prof. Dr. Stefan Kochanek


Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 February 2018 in Nature
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Journal Article
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QGQiang Guo
Qiang Guo
BHBin Huang
Bin Huang
JCJingdong Cheng
Jingdong Cheng
MSManuel Seefelder
Manuel Seefelder
TETatjana Engler
Tatjana Engler
SKStefan Kochanek
Stefan Kochanek

1 October 2010 in Journal of Virology
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Journal Article
Closed access
SSSam Laurel Stephen
Sam Laurel Stephen
EMEugenio Montini
Eugenio Montini
VSVijayshankar Ganesh Sivanandam
Vijayshankar Ganesh Sivanandam
MAMuhseen Al-Dhalimy
Muhseen Al-Dhalimy
HKHans Kestler
Hans Kestler
SKStefan Kochanek
Stefan Kochanek
So far there has been no report of any clinical or preclinical evidence for chromosomal vector integration following adenovirus (Ad) vector-mediated gene transfer in vivo . We used liver gene transfer with high-capacity Ad vectors in the FAH Δexon5 mouse model to analyze homologous and heterologous recombination events between vector and chromosomal DNA. Intravenous injection of Ad vectors either expressing a fumarylacetoacetate hydrolase (FAH) cDNA or carrying part of the FAH genomic locus resulted in liver nodules of FAH-expressing hepatocytes, demonstrating chromosomal vector integration. Analysis of junctions between vector and chromosomal DNA following heterologous recombination indicated integration of the vector genome through its termini. Heterologous recombination occurred with a median frequency of 6.72 × 10 −5 per transduced hepatocyte, while homologous recombination occurred more rarely with a median frequency of 3.88 × 10 −7 . This study has established quantitative and qualitative data on recombination of adenoviral vector DNA with genomic DNA in vivo , contributing to a risk-benefit assessment of the biosafety of Ad vector-mediated gene transfer.

23 March 2015 in PLOS ONE
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Journal Article
Open access
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BHBin Huang
Bin Huang
TLTanja Lucas
Tanja Lucas
CKClaudia Kueppers
Claudia Kueppers
XDXiaomin Dong
Xiaomin Dong
MKMaike Krause
Maike Krause
SKStefan Kochanek
Stefan Kochanek
Huntingtin (Htt) is a 350 kD intracellular protein, ubiquitously expressed and mainly localized in the cytoplasm. Huntington’s disease (HD) is caused by a CAG triplet amplification in exon 1 of the corresponding gene resulting in a polyglutamine (polyQ) expansion at the N-terminus of Htt. Production of full-length Htt has been difficult in the past and so far a scalable system or process has not been established for recombinant production of Htt in human cells. The ability to produce Htt in milligram quantities would be a prerequisite for many biochemical and biophysical studies aiming in a better understanding of Htt function under physiological conditions and in case of mutation and disease. For scalable production of full-length normal (17Q) and mutant (46Q and 128Q) Htt we have established two different systems, the first based on doxycycline-inducible Htt expression in stable cell lines, the second on “gutless” adenovirus mediated gene transfer. Purified material has then been used for biochemical characterization of full-length Htt. Posttranslational modifications (PTMs) were determined and several new phosphorylation sites were identified. Nearly all PTMs in full-length Htt localized to areas outside of predicted alpha-solenoid protein regions. In all detected N-terminal peptides methionine as the first amino acid was missing and the second, alanine, was found to be acetylated. Differences in secondary structure between normal and mutant Htt, a helix-rich protein, were not observed in our study. Purified Htt tends to form dimers and higher order oligomers, thus resembling the situation observed with N-terminal fragments, although the mechanism of oligomer formation may be different.

4 July 2022 in eLife
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Journal Article
Open access
LKLea Krutzke
Lea Krutzke
RRReinhild Rösler
Reinhild Rösler
EAEllen Allmendinger
Ellen Allmendinger
TETatjana Engler
Tatjana Engler
SWSebastian Wiese
Sebastian Wiese
SKStefan Kochanek
Stefan Kochanek
ChAdOx1 nCov-19 and Ad26.COV2.S are approved vaccines inducing protective immunity against SARS-CoV-2 infection in humans by expressing the Spike protein of SARS-CoV-2. We analyzed protein content and protein composition of ChAdOx1 nCov-19 and Ad26.COV2.S by biochemical methods and by mass spectrometry. Four out of four tested lots of ChAdOx1 nCoV-19 contained significantly higher than expected levels of host cell proteins (HCPs) and of free viral proteins. The most abundant contaminating HCPs belonged to the heat-shock protein and cytoskeletal protein families. The HCP content exceeded the 400 ng specification limit per vaccine dose, as set by the European Medicines Agency (EMA) for this vaccine, by at least 25-fold and the manufacturer’s batch-release data in some of the lots by several hundred-fold. In contrast, three tested lots of the Ad26.COV2.S vaccine contained only very low amounts of HCPs. As shown for Ad26.COV2.S production of clinical grade adenovirus vaccines of high purity is feasible at an industrial scale. Correspondingly, purification procedures of the ChAdOx1 nCov-19 vaccine should be modified to remove protein impurities as good as possible. Our data also indicate that standard quality assays, as they are used in the manufacturing of proteins, have to be adapted for vectored vaccines.

21 July 2021 in Viruses
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DNDirk M. Nettelbeck
Dirk M. Nettelbeck
MLMathias Felix Leber
Mathias Felix Leber
Jennifer AltomonteJennifer Altomonte
Jennifer Altomonte
Assia AngelovaAssia Angelova
Assia Angelova
JBJulia Beil
Julia Beil
GUGuy Ungerechts
Guy Ungerechts
Virotherapy research involves the development, exploration, and application of oncolytic viruses that combine direct killing of cancer cells by viral infection, replication, and spread (oncolysis) with indirect killing by induction of anti-tumor immune responses. Oncolytic viruses can also be engineered to genetically deliver therapeutic proteins for direct or indirect cancer cell killing. In this review—as part of the special edition on “State-of-the-Art Viral Vector Gene Therapy in Germany”—the German community of virotherapists provides an overview of their recent research activities that cover endeavors from screening and engineering viruses as oncolytic cancer therapeutics to their clinical translation in investigator-initiated and sponsored multi-center trials. Preclinical research explores multiple viral platforms, including new isolates, serotypes, or fitness mutants, and pursues unique approaches to engineer them towards increased safety, shielded or targeted delivery, selective or enhanced replication, improved immune activation, delivery of therapeutic proteins or RNA, and redirecting antiviral immunity for cancer cell killing. Moreover, several oncolytic virus-based combination therapies are under investigation. Clinical trials in Germany explore the safety and potency of virotherapeutics based on parvo-, vaccinia, herpes, measles, reo-, adeno-, vesicular stomatitis, and coxsackie viruses, including viruses encoding therapeutic proteins or combinations with immune checkpoint inhibitors. These research advances represent exciting vantage points for future endeavors of the German virotherapy community collectively aimed at the implementation of effective virotherapeutics in clinical oncology.

5 September 2008 in The Journal of Gene Medicine
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Journal Article
Closed access
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SSSam Laurel Stephen
Sam Laurel Stephen
VSVijayshankar Ganesh Sivanandam
Vijayshankar Ganesh Sivanandam
SKStefan Kochanek
Stefan Kochanek