Fangying Chen

Fangying Chen


Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 December 2015 in Journal of Insect Conservation
Verified
Journal Article
Closed access
PDF file
KGKe Gao
Ke Gao
XLXiu-shan Li
Xiu-shan Li
FCFangying Chen
Fangying Chen
ZGZhenying Guo
Zhenying Guo
JSJosef Settele
Josef Settele

15 September 2021 in Insect Science
Verified
Journal Article
Open access
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FCFangying Chen
Fangying Chen
MSMartijn Schenkel
Martijn Schenkel
EGElzemiek Geuverink
Elzemiek Geuverink
LZLouis van de Zande
Louis van de Zande
Leo BeukeboomLeo Beukeboom
Leo Beukeboom
Complementary sex determination (CSD) is a widespread sex determination mechanism in haplodiploid Hymenoptera. Under CSD, sex is determined by the allelic state of one or multiple CSD loci. Heterozygosity at one or more loci leads to female development, whereas hemizygosity of haploid eggs and homozygosity of diploid eggs results in male development. Sexual (arrhenotokous) reproduction normally yields haploid male and diploid female offspring. Under asexual reproduction (thelytoky), diploidized unfertilized eggs develop into females. Thelytoky is often induced by bacterial endosymbionts that achieve egg diploidization by gamete duplication. As gamete duplication leads to complete homozygosity, endosymbiont‐induced thelytokous reproduction is presumed to be incompatible with CSD, which relies on heterozygosity for female development. Previously, we excluded CSD in fourAsobara(Braconidae) species and proposed a two‐step mechanism forWolbachia‐induced thelytoky inAsobara japonica. Here, we conclusively reject CSD in two cynipid wasp species,Leptopilina heterotomaandLeptopilina clavipes. We further show that thelytoky inL. clavipesdepends onWolbachiatiter but that diploidization and feminization steps cannot be separated, unlike inA. japonica. We discuss what these results reveal about the sex determination mechanism ofL. clavipesand the presumed incompatibility between CSD and endosymbiont‐induced thelytoky in the Hymenoptera.

30 September 2022 in Molecular Ecology
Verified
Journal Article
Open access
PBPina Brinker
Pina Brinker
FCFangying Chen
Fangying Chen
YCYacine Ben Chehida
Yacine Ben Chehida
Leo BeukeboomLeo Beukeboom
Leo Beukeboom
MFMichael C. Fontaine
Michael C. Fontaine
Joana Falcão SallesJoana Falcão Salles
Joana Falcão Salles
The microbial community composition is crucial for diverse life‐history traits in many organisms. However, we still lack a sufficient understanding of how the host microbiome is acquired and maintained, a pressing issue in times of global environmental change. Here we investigated to what extent host genotype, environmental conditions, and the endosymbiont Wolbachia influence the bacterial communities in the parasitic wasp Asobara japonica. We sampled multiple wasp populations across 10 locations in their natural distribution range in Japan and sequenced the host genome (whole genome sequencing) and microbiome (16S rRNA gene). We compared the host population structure and bacterial community composition of wasps that reproduce sexually and are uninfected with Wolbachia with wasps that reproduce asexually and carry Wolbachia. The bacterial communities in asexual wasps were highly similar due to a strong effect of Wolbachia rather than host genomic structure. In contrast, in sexual wasps, bacterial communities appear primarily shaped by a combination of population structure and environmental conditions. Our research highlights that multiple factors shape the bacterial communities of an organism and that the presence of a single endosymbiont can strongly alter their compositions. This information is crucial to understanding how organisms and their associated microbiome will react in the face of environmental change.

18 July 2024 in bioRxiv
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Preprint
Open access
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SWShih-Che Weng
Shih-Che Weng
FCFangying Chen
Fangying Chen
MLMing Li
Ming Li
SLSammy Lee
Sammy Lee
CGConnor Gerry
Connor Gerry
OAOmar Akbari
Omar Akbari
Genetic biocontrol interventions targeting mosquito-borne diseases require the release of male mosquitoes exclusively, as only females consume blood and transmit human pathogens. This reduces the risk of spreading pathogens while enabling effective population control. Robust sex sorting methods to enable early larval sorting in mosquitoes need to be developed to allow for scalable sex sorting for genetic biocontrol interventions. This study applies the SEPARATOR (Sexing Element Produced by Alternative RNA-splicing of A Transgenic Observable Reporter) system, previously developed for Aedes aegypti , to the Asian malaria vector Anopheles stephensi . We hypothesized that the intron from the doublesex gene in Anopheles gambiae would function in An. stephensi due to evolutionary conservation. Our results confirm that the splicing module from An. gambiae operates effectively in An. stephensi , demonstrating evolutionary conservation in sex-specific splicing events between these species. This system enables reliable positive male selection from first instar larval to pupal stages. RT-PCR analysis demonstrates that male-specific EGFP expression is dependent on doublesex sex-specific splicing events. The SEPARATOR system’s independence from sex-chromosome linkage confers resistance to meiotic recombination and chromosomal rearrangements. This approach may facilitate the mass release of males, and the cross-species portability of SEPARATOR establishes it as a valuable tool for genetic biocontrol interventions across various pest species.

27 November 2025 in Journal of Molecular Biology
Verified
Journal Article
Open access
DBDaniel J. Brogan
Daniel J. Brogan
CLCalvin P. Lin
Calvin P. Lin
EBElena Dalla Benetta
Elena Dalla Benetta
TWTianqi Wang
Tianqi Wang
FCFangying Chen
Fangying Chen
OAOmar Akbari
Omar Akbari
The recent discovery of the type III-E class of CRISPR-Cas effectors has reshaped our fundamental understanding of CRISPR-Cas evolution and classification. Type III-E effectors are composed of several Cas7-like domains and a single Cas11-like domain naturally fused together to create a single polypeptide capable of targeting and degrading RNA. Here we identified a novel type III-E-like effector composed of three Cas7 domains and a Cas1 domain which was not active but could be engineered into an active chimeric RNA-targeting Cas effector by domain additions and swaps from other type III-E effectors. The results reveal that various domains in type III-E effectors can be swapped for the equivalent domain from a different type III-E effector. Remarkably, the Cas1 domain located at the C-terminus of Cas7-1 could be swapped in place of the Cas11 domain located between the Cas7.1 and the Cas7.2 domains of DiCas7-11. The results reveal a new modality for engineering type III-E effectors from the blueprints found in nature.