Takafumi Shimizu

Dr. Takafumi Shimizu

orcid

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
16 September 2013 in Journal of Experimental Botany
Verified
Journal Article
Open access
PDF file
NYNaoki Yokotani
Naoki Yokotani
YSYuko Sato
Yuko Sato
STShigeru Tanabe
Shigeru Tanabe
TCTetsuya Chujo
Tetsuya Chujo
TSTakafumi Shimizu
Takafumi Shimizu
YNYoko Nishizawa
Yoko Nishizawa
OsWRKY76 encodes a group IIa WRKY transcription factor of rice. The expression of OsWRKY76 was induced within 48h after inoculation with rice blast fungus (Magnaporthe oryzae), and by wounding, low temperature, benzothiadiazole, and abscisic acid. Green fluorescent protein-fused OsWRKY76 localized to the nuclei in rice epidermal cells. OsWRKY76 showed sequence-specific DNA binding to the W-box element in vitro and exhibited W-box-mediated transcriptional repressor activity in cultured rice cells. Overexpression of OsWRKY76 in rice plants resulted in drastically increased susceptibility to M. oryzae, but improved tolerance to cold stress. Microarray analysis revealed that overexpression of OsWRKY76 suppresses the induction of a specific set of PR genes and of genes involved in phytoalexin synthesis after inoculation with blast fungus, consistent with the observation that the levels of phytoalexins in the transgenic rice plants remained significantly lower than those in non-transformed control plants. Furthermore, overexpression of OsWRKY76 led to the increased expression of abiotic stress-associated genes such as peroxidase and lipid metabolism genes. These results strongly suggest that OsWRKY76 plays dual and opposing roles in blast disease resistance and cold tolerance.

26 October 2016 in Nature Communications
Verified
Journal Article
Open access
PDF file
YKYuri Kanno
Yuri Kanno
TOTakaya Oikawa
Takaya Oikawa
YCYasutaka Chiba
Yasutaka Chiba
YIYasuhiro Ishimaru
Yasuhiro Ishimaru
TSTakafumi Shimizu
Takafumi Shimizu
MSMitsunori Seo
Mitsunori Seo
Transmembrane transport of plant hormones is required for plant growth and development. Despite reports of a number of proteins that can transport the plant hormone gibberellin (GA), the mechanistic basis for GA transport and the identities of the transporters involved remain incomplete. Here, we provide evidence that Arabidopsis SWEET proteins, AtSWEET13 and AtSWEET14, which are members of a family that had previously been linked to sugar transport, are able to mediate cellular GA uptake when expressed in yeast and oocytes. A double sweet13 sweet14 mutant has a defect in anther dehiscence and this phenotype can be reversed by exogenous GA treatment. In addition, sweet13 sweet14 exhibits altered long distant transport of exogenously applied GA and altered responses to GA during germination and seedling stages. These results suggest that AtSWEET13 and AtSWEET14 may be involved in modulating GA response in Arabidopsis.

24 January 2013 in The Plant Journal
Verified
Journal Article
Open access
PDF file
MRMichael Riemann
Michael Riemann
KHKen Haga
Ken Haga
TSTakafumi Shimizu
Takafumi Shimizu
KOKazunori Okada
Kazunori Okada
SASugihiro Ando
Sugihiro Ando
MIMoritoshi Iino
Moritoshi Iino
Summary: Two photomorphogenic mutants of rice, coleoptile photomorphogenesis 2 (cpm2) and hebiba, were found to be defective in the gene encoding allene oxide cyclase (OsAOC) by map‐based cloning and complementation assays. Examination of the enzymatic activity of recombinant GST–OsAOC indicated that OsAOC is a functional enzyme that is involved in the biosynthesis of jasmonic acid and related compounds. The level of jasmonate was extremely low in both mutants, in agreement with the fact that rice has only one gene encoding allene oxide cyclase. Several flower‐related mutant phenotypes were observed, including morphological abnormalities of the flower and early flowering. We used these mutants to investigate the function of jasmonate in the defence response to the blast fungus Magnaporthe oryzae. Inoculation assays with fungal spores revealed that both mutants are more susceptible than wild‐type to an incompatible strain of M. oryzae, in such a way that hyphal growth was enhanced in mutant tissues. The level of jasmonate isoleucine, a bioactive form of jasmonate, increased in response to blast infection. Furthermore, blast‐induced accumulation of phytoalexins, especially that of the flavonoid sakuranetin, was found to be severely impaired in cpm2 and hebiba. Together, the present study demonstrates that, in rice, jasmonate mediates the defence response against blast fungus.

24 March 2015 in Journal of Plant Research
Verified
Journal Article
Closed access
PDF file
YCYasutaka Chiba
Yasutaka Chiba
TSTakafumi Shimizu
Takafumi Shimizu
SMShinya Miyakawa
Shinya Miyakawa
YKYuri Kanno
Yuri Kanno
TKTomokazu Koshiba
Tomokazu Koshiba
MSMitsunori Seo
Mitsunori Seo

6 March 2013 in Plant Molecular Biology
Verified
Journal Article
Closed access
PDF file
TCTetsuya Chujo
Tetsuya Chujo
Koji MiyamotoKoji Miyamoto
Koji Miyamoto
TSTakeo Shimogawa
Takeo Shimogawa
TSTakafumi Shimizu
Takafumi Shimizu
YOYuko Otake
Yuko Otake
KOKazunori Okada
Kazunori Okada

1 June 2012 in Journal of Biological Chemistry
Verified
Journal Article
Open access
TSTakafumi Shimizu
Takafumi Shimizu
FLFengqiu Lin
Fengqiu Lin
MHMorifumi Hasegawa
Morifumi Hasegawa
KOKazunori Okada
Kazunori Okada
HNHideaki Noijiri
Hideaki Noijiri
HYHisakazu Yamane
Hisakazu Yamane
Sakuranetin, the major flavonoid phytoalexin in rice, is induced by ultraviolet (UV) irradiation, CuCl(2) treatment, jasmonic acid treatment, and infection by phytopathogens. It was recently demonstrated that sakuranetin has anti-inflammatory activity, anti-mutagenic activity, anti-pathogenic activities against Helicobacter pylori, Leishmania, and Trypanosoma and contributes to the maintenance of glucose homeostasis in animals. Thus, sakuranetin is a useful compound as a plant antibiotic and a potential pharmaceutical agent. Sakuranetin is biosynthesized from naringenin by naringenin 7-O-methyltransferase (NOMT). In previous research, rice NOMT (OsNOMT) was purified to apparent homogeneity from UV-treated wild-type rice leaves, but the purified protein, named OsCOMT1, exhibited caffeic acid O-methyltransferase (COMT) activity and not NOMT activity. In this study, we found that OsCOMT1 does not contribute to sakuranetin production in rice in vivo, and we purified OsNOMT using the oscomt1 mutant. A crude protein preparation from UV-treated oscomt1 leaves was subjected to three sequential purification steps, resulting in a 400-fold purification from the crude enzyme preparation. Using SDS-PAGE, the purest enzyme preparation showed a minor band at an apparent molecular mass of 40 kDa. Two O-methyltransferase-like proteins, encoded by Os04g0175900 and Os12g0240900, were identified from the 40-kDa band by MALDI-TOF/TOF analysis. Recombinant Os12g0240900 protein showed NOMT activity, but the recombinant Os04g0175900 protein did not. Os12g0240900 expression was induced by jasmonic acid treatment in rice leaves prior to sakuranetin accumulation, and the Os12g0240900 protein showed reasonable kinetic properties to OsNOMT. On the basis of these results, we conclude that Os12g0240900 encodes an OsNOMT.