Pawel Dubiela

Dr. Pawel Dubiela

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Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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PHPiotr Humeniuk
Piotr Humeniuk
PDPawel Dubiela
Pawel Dubiela
KHKarin Hoffmann-Sommergruber
Karin Hoffmann-Sommergruber
Dendritic cells (DCs) are the most important antigen presenting cells to activate naïve T cells, which results in the case of Type 1 allergies in a Type 2 helper T cell (Th2)-driven specific immune response towards allergens. So far, a number of different subsets of specialized DCs in different organs have been identified. In the recent past methods to study the interaction of DCs with allergenic proteins, their different uptake and processing mechanisms followed by the presentation to T cells were developed. The following review aims to summarize the most important characteristics of DC subsets in the context of allergic diseases, and highlights the recent findings. These detailed studies can contribute to a better understanding of the pathomechanisms of allergic diseases and contribute to the identification of key factors to be addressed for therapeutic interventions.

14 July 2015 in Molecular Nutrition & Food Research
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SPSabine Pfeifer
Sabine Pfeifer
MBMerima Bublin
Merima Bublin
PDPawel Dubiela
Pawel Dubiela
KHKarin Hummel
Karin Hummel
JWJudith Wortmann
Judith Wortmann
KHKarin Hoffmann-Sommergruber
Karin Hoffmann-Sommergruber
Scope: Allergens from nuts frequently induce severe allergic reactions in sensitive individuals. The aim of this study was to elucidate the physicochemical characteristics of natural Cor a 14, the 2S albumin from hazelnut.Methods and results: Cor a 14 was purified from raw hazelnuts using a combination of precipitation and chromatographic techniques. The protein was analyzed using gel electrophoresis, MS, and far‐UV circular dichroism (CD) analyses. The immunoglobulin E (IgE) binding of native, heat‐treated, and in vitro digested Cor a 14 was studied. We identified two different Cor a 14 isoforms and showed microclipping at the C‐terminus. CD spectra at room temperature showed the typical characteristics of 2S albumins, and temperatures of more than 80°C were required to start unfolding of Cor a 14 demonstrating its high stability to heat treatment. In vitro digestion experiments revealed that Cor a 14 is resistant to proteolytic degradation. Native and heat‐treated protein was recognized by sera from hazelnut allergic patients. However, denaturation of the allergen led to significantly reduced IgE binding.Conclusion: We identified two different isoforms of Cor a 14 displaying high stability under heating and gastric and duodenal conditions. Data from IgE‐binding experiments revealed the existence of both, linear and conformational epitopes.

1 December 2017 in Journal of Allergy and Clinical Immunology
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PDPawel Dubiela
Pawel Dubiela
RARoberta Aina
Roberta Aina
DPDominika Polak
Dominika Polak
SGSabine Geiselhart
Sabine Geiselhart
PHPiotr Humeniuk
Piotr Humeniuk
KHKarin Hoffmann-Sommergruber
Karin Hoffmann-Sommergruber

7 October 2015 in Journal of Agricultural and Food Chemistry
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LOLesa R. Offermann
Lesa R. Offermann
MBMerima Bublin
Merima Bublin
MPMakenzie L. Perdue
Makenzie L. Perdue
SPSabine Pfeifer
Sabine Pfeifer
PDPawel Dubiela
Pawel Dubiela
KHKarin Hoffmann-Sommergruber
Karin Hoffmann-Sommergruber
Nonspecific lipid transfer proteins (nsLTPs) are basic proteins, stabilized by four disulfide bonds, and are expressed throughout the plant kingdom. These proteins are also known as important allergens in fruits and tree nuts. In this study, the nsLTP from hazelnuts, Cor a 8, was purified and its crystal structure determined. The protein is stable at low pH and refolds after thermal denaturation. Molecular dynamics simulations were used to provide an insight into conformational changes of Cor a 8 upon ligand binding. When known epitope areas from Pru p 3 were compared to those of Cor a 8, differences were obvious, which may contribute to limited cross-reactivity between peach and hazelnut allergens. Differences in epitope regions may contribute to limited cross-reactivity between Cor a 8 and nsLTPs from other plant sources. The structure of Cor a 8 represents the first resolved structure of a hazelnut allergen.

27 July 2018 in Scientific Reports
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PDPawel Dubiela
Pawel Dubiela
SKStefan Kabasser
Stefan Kabasser
NSNicolas Smargiasso
Nicolas Smargiasso
SGSabine Geiselhart
Sabine Geiselhart
MBMerima Bublin
Merima Bublin
KHKarin Hoffmann-Sommergruber
Karin Hoffmann-Sommergruber
Walnuts are ranked high in the list of the culprit foods inducing severe allergic reactions. Jug r 2 has been identified as a major allergen in common walnut by cDNA cloning from a somatic cell line. So far, studies were performed on the allergenic activity of recombinant Jug r 2, yet there is still no evidence about the physicochemical characteristics of the natural allergen. Therefore, we aimed to purify and deeply characterize natural Jug r 2 and to assess IgE cross-reactivity among vicilins from different tree nuts. Extensive mass spectrometry analysis of the obtained purified vicilin allowed identification of the protein sequence that displayed only 44% identity to Jug r 2. The newly identified vicilin (Jug r 6) was recognized by IgE of 26% in walnut allergic patients’ sera tested. In contrast to Jug r 2, Jug r 6 displayed a remarkable level of cross-reactivity when tested with homologues from hazelnut, sesame and pistachio. It is the first report showing the necessity of proteomic studies to improve allergy component resolved diagnosis.

14 February 2019 in Scientific Reports
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PDPawel Dubiela
Pawel Dubiela
RCRebecca Del Conte
Rebecca Del Conte
FCFrancesca Cantini
Francesca Cantini
TBTomasz Borowski
Tomasz Borowski
RARoberta Aina
Roberta Aina
SAStefano Alessandri
Stefano Alessandri
Plant non-specific lipid transfer proteins type 1 (nsLTP1) are small basic proteins with a hydrophobic cavity able to host a number of different ligands: i.e. fatty acids, fatty acyl-CoA, phospholipids, glycolipids, and hydroxylated fatty acids. However, ligand binding specificity differs among nsLTPs. Within this protein family, Jug r 3 from walnut has been identified as a major allergen. So far, data on the structural characterization of Jug r 3 and its lipid binding capacity are lacking. We report the results from a fluorescence-based ligand-binding assay and ligand-based NMR experiments, to study the binding interactions between Jug r 3 and the 18-carbon monounsaturated oleic acid. Furthermore, protein-based NMR experiments were employed to detect the oleate binding site of Jug r 3. The NMR data were used to dock the oleate molecule into the structural model of Jug r 3. Finally, the impact of the interaction on the allergenic potential of Jug r 3 was investigated by IgE ELISA with 6 sera from walnut allergic patients. Our data corroborate the hypothesis of direct impact of food-derived matrix on the IgE reactivity of nsLTPs.