Khandaker Asif Ahmed

Mr. Khandaker Asif Ahmed

Australian Centre for Disease Preparedness, Geelong, Victoria, Australia
orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 April 2024 in G3: Genes, Genomes, Genetics
Verified
Journal Article
Open access
PDF file
RYReginald Young
Reginald Young
Khandaker Asif AhmedKhandaker Asif Ahmed
Khandaker Asif Ahmed
LCLeon Court
Leon Court
CCCynthia Castro-Vargas
Cynthia Castro-Vargas
AMAnna Marcora
Anna Marcora
Gunjan PandeyGunjan Pandey
Gunjan Pandey
Galleria mellonella is a pest of honeybees in many countries because its larvae feed on beeswax. However, G. mellonella larvae can also eat various plastics, including polyethylene, polystyrene and polypropylene, so the species is garnering increasing interest as a tool for plastic biodegradation research. This paper presents an improved genome (99.3% completed lepidoptera_odb10 BUSCO; genome mode) for G. mellonella. This 472 Mb genome is in 221 contigs with an N50 of 6.4 MB and contains 13,604 protein-coding genes. Genes that code for known and putative polyethylene-degrading enzymes and their similarity to proteins found in other Lepidoptera are highlighted. An analysis of secretory proteins more likely to be involved in the plastic catabolic process has also been carried out.

13 August 2024
Verified
Book Chapter
Closed access
PDF file
ZZZeyu Zhang
Zeyu Zhang
Khandaker Asif AhmedKhandaker Asif Ahmed
Khandaker Asif Ahmed
MHMd. Rakibul Hasan
Md. Rakibul Hasan
Tom GedeonTom Gedeon
Tom Gedeon
MHMd Zakir Hossain
Md Zakir Hossain

10 December 2024 in Insect Biochemistry and Molecular Biology
Verified
Journal Article
Open access
Khandaker Asif AhmedKhandaker Asif Ahmed
Khandaker Asif Ahmed
HYHeng Lin Yeap
Heng Lin Yeap
CCChris W. Coppin
Chris W. Coppin
JLJian-Wei Liu
Jian-Wei Liu
GPGunjan Pandey
Gunjan Pandey
JOJohn Graham Oakeshott
John Graham Oakeshott
In many insect species, the ability of males to inhibit their mates from remating is an important component of fitness. This ability is also essential for the effective management of insect pests, including tephritid fruit flies, using the Sterile Insect Technique. Here we apply transcriptomics and proteomics to male reproductive tissues before and after mating to characterize components of semen that might mediate remating inhibition in Queensland fruit fly. We found 144 genes whose transcripts were enriched, or proteins expressed, in reproductive tissue and which also varied in amount after mating. Some were associated with testes, accessory glands and ejaculatory apodeme, but those from the ejaculatory apodeme were over-represented compared to those not enriched in reproductive tissue or mating responsive. These included 13 related genes clustered within one Mb on chromosome 5. Functional annotations implicated a broad range of biochemical processes in the genes/ proteins enriched in reproductive tissue and mating responsive, with cuticle structure most commonly implicated among the subset of these that were apodeme-enriched and a kinase involved in vitellogenesis implicated for one of the 13 clustered genes. We did not find a homolog of the much studied Drosophila melanogaster Sex Peptide but comparative genomics indicated that some of the tissue-enriched, mating responsive genes/proteins were rapidly evolving in tephritids (including in the Queensland fruit fly lineage), suggesting recent adaptation to new functional niches. Our results provide a set of candidate mediators of remating inhibition for further functional testing.

7 January 2022 in Scientific Reports
Verified
Journal Article
Open access
PDF file
Khandaker Asif AhmedKhandaker Asif Ahmed
Khandaker Asif Ahmed
HYHeng Lin Yeap
Heng Lin Yeap
GPGunjan Pandey
Gunjan Pandey
SLSiu Fai Lee
Siu Fai Lee
PTPhillip W. Taylor
Phillip W. Taylor
JOJohn G. Oakeshott
John G. Oakeshott
Females of many insect species are unreceptive to remating for a period following their first mating. This inhibitory effect may be mediated by either the female or her first mate, or both, and often reflects the complex interplay of reproductive strategies between the sexes. Natural variation in remating inhibition and how this phenotype responds to captive breeding are largely unexplored in insects, including many pest species. We investigated genetic variation in remating propensity in the Queensland fruit fly,Bactrocera tryoni, using strains differing in source locality and degree of domestication. We found up to threefold inherited variation between strains from different localities in the level of intra-strain remating inhibition. The level of inhibition also declined significantly during domestication, which implied the existence of genetic variation for this trait within the starting populations as well. Inter-strain mating and remating trials showed that the strain differences were mainly due to the genotypes of the female and, to a lesser extent, the second male, with little effect of the initial male genotype. Implications for our understanding of fruit fly reproductive biology and population genetics and the design of Sterile Insect Technique pest management programs are discussed.

23 October 2022 in Fermentation
Verified
Journal Article
Open access
PDF file
RMRajib Majumder
Rajib Majumder
MAMD BADRUL ALAM
MD BADRUL ALAM
Keshav Raj PaudelKeshav Raj Paudel
Keshav Raj Paudel
Khandaker Asif AhmedKhandaker Asif Ahmed
Khandaker Asif Ahmed
Hari Prasad DevkotaHari Prasad Devkota
Hari Prasad Devkota
YPYonga-Ha Park
Yonga-Ha Park
Lactic acid bacteria are one of the potential natural remedies used worldwide, commonly known as probiotics. Here, the aim of this research investigation was to isolate a probiotic Lactobacilli strain, YLM015, from the popular Korean fermented vegetable “Kimchi” and to evaluate its anti-viral potential against influenza virus A (IFVA) H1N1 using the MDCK cell line in vitro, and in embryonated eggs in ovo. The YML015 strain was selected from among the 1200 Lactobacilli isolates for further studies based on its potent anti-viral efficacy. YML015 was identified and characterized as Lactoplantibacillus plantarum YML015 based on the 16S rRNA gene sequencing and biochemically with an API 50 CHL Kit. In ovo assay experienced with embryonated eggs and the hemagglutination inhibition method, as well as cytopathogenic reduction assay, was performed individually to observe anti-influenza viral activity of YML015 against influenza virus A H1N1. Additionally, YML015 was classified for its non-resistance nature as safe for humans and animals as confirmed by the antibiotic susceptibility (MIC) test, cell viability, and hemolysis assay. The heat stability test was also experienced by using different heat-treated cell-free supernatant (CFS) samples of YML015. As a result, YML015 showed highly potent anti-viral activity against influenza virus A H1N1 in vitro in the MDCK cell line. Overall findings suggest that anti-influenza viral activity of L. plantarum YML015 makes it a potential candidate of choice for use as an influential probiotic in pharmacological preparations to protect humans and animals from flu and viral infection.

2 January 2025 in Mitochondrial DNA Part B
Verified
Journal Article
Open access
Khandaker Asif AhmedKhandaker Asif Ahmed
Khandaker Asif Ahmed
Anjana KarawitaAnjana Karawita
Anjana Karawita
MKMelissa J. Klein
Melissa J. Klein
LMLuana Fiorella Mincarelli
Luana Fiorella Mincarelli
BSBarbara Secondini
Barbara Secondini
CHChristopher M. Hardy
Christopher M. Hardy
Biting midges (Culicoides spp.) are important vectors of several insect borne arboviruses but are underrepresented in terms of availability of high-resolution genomic resources. We assembled and annotated complete mitochondrial genomes for two Culicoides species, namely C. brevitarsis and C. imicola which are proven vectors for Bluetongue Virus (BTV). We used both long read and short read sequencing technologies to assemble the circular genomes. The genome sizes are 17,100 bp and 17,031 bp, respectively, all comprising 37 genes, including 13 protein, 22 tRNA, two rRNA coding genes, and one non-coding AT rich control region. The gene organizations and orientations are comparable to other available Culicoides mitogenomes, except for a translocation of ND2 and six tRNA genes in both C. brevitarsis and C. imicola. Eleven protein-coding genes encode a full TAA stop codon, while two (ND5, COX3) are completed by mRNA polyadenylation. Phylogenetic analysis of the mitogenomes showed C. brevitarsis and C. imicola form a monophyletic group. The sequences of these mitogenomes contribute to a baseline of molecular tools for diagnostics and surveillance for use by World Organisation for Animal Health (WOAH) reference laboratories for monitoring vectors of emerging diseases.