Beatriz Pontes

Mrs. Beatriz Pontes

orcid

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 October 2015 in Journal of Biomedical Informatics
Verified
Journal Article
Open access
BPBeatriz Pontes
Beatriz Pontes
RGRaúl Giráldez
Raúl Giráldez
Jesus S. Aguilar-RuizJesus S. Aguilar-Ruiz
Jesus S. Aguilar-Ruiz
Biclustering has become a popular technique for the study of gene expression data, especially for discovering functionally related gene sets under different subsets of experimental conditions. Most of biclustering approaches use a measure or cost function that determines the quality of biclusters. In such cases, the development of both a suitable heuristics and a good measure for guiding the search are essential for discovering interesting biclusters in an expression matrix. Nevertheless, not all existing biclustering approaches base their search on evaluation measures for biclusters. There exists a diverse set of biclustering tools that follow different strategies and algorithmic concepts which guide the search towards meaningful results. In this paper we present a extensive survey of biclustering approaches, classifying them into two categories according to whether or not use evaluation metrics within the search method: biclustering algorithms based on evaluation measures and non metric-based biclustering algorithms. In both cases, they have been classified according to the type of meta-heuristics which they are based on.

12 March 2015 in PLOS ONE
Verified
Journal Article
Open access
PDF file
BPBeatriz Pontes
Beatriz Pontes
RGRal Girldez
Ral Girldez
Jesus S. Aguilar-RuizJesus S. Aguilar-Ruiz
Jesus S. Aguilar-Ruiz
An noticeable number of biclustering approaches have been proposed proposed for the study of gene expression data, especially for discovering functionally related gene sets under different subsets of experimental conditions. In this context, recognizing groups of co-expressed or co-regulated genes, that is, genes which follow a similar expression pattern, is one of the main objectives. Due to the problem complexity, heuristic searches are usually used instead of exhaustive algorithms. Furthermore, most of biclustering approaches use a measure or cost function that determines the quality of biclusters. Having a suitable quality metric for bicluster is a critical aspect, not only for guiding the search, but also for establishing a comparison criteria among the results obtained by different biclustering techniques. In this paper, we analyse a large number of existing approaches to quality measures for gene expression biclusters, as well as we present a comparative study of them based on their capability to recognize different expression patterns in biclusters.

23 February 2013 in Algorithms for Molecular Biology
Verified
Journal Article
Open access
PDF file
BPBeatriz Pontes
Beatriz Pontes
RGRaúl Giráldez
Raúl Giráldez
Jesus S. Aguilar-RuizJesus S. Aguilar-Ruiz
Jesus S. Aguilar-Ruiz
Biclustering algorithms for microarray data aim at discovering functionally related gene sets under different subsets of experimental conditions. Due to the problem complexity and the characteristics of microarray datasets, heuristic searches are usually used instead of exhaustive algorithms. Also, the comparison among different techniques is still a challenge. The obtained results vary in relevant features such as the number of genes or conditions, which makes it difficult to carry out a fair comparison. Moreover, existing approaches do not allow the user to specify any preferences on these properties.

1 February 2012 in Computers in Biology and Medicine
Verified
Journal Article
Closed access
Federico DivinaFederico Divina
Federico Divina
BPBeatriz Pontes
Beatriz Pontes
RGRaúl Giráldez
Raúl Giráldez
Jesus S. Aguilar-RuizJesus S. Aguilar-Ruiz
Jesus S. Aguilar-Ruiz

1 October 2014 in Expert Systems with Applications
Verified
Journal Article
Closed access
FCFermín L. Cruz
Fermín L. Cruz
JTJosé A. Troyano
José A. Troyano
BPBeatriz Pontes
Beatriz Pontes
FOF. Javier Ortega
F. Javier Ortega

6 February 2024 in Heliyon
Verified
Journal Article
Open access
MAMorteza Aldarraji
Morteza Aldarraji
BVBelén Vega
Belén Vega
BPBeatriz Pontes
Beatriz Pontes
Basim MahmoodBasim Mahmood
Basim Mahmood
José C. RiquelmeJosé C. Riquelme
José C. Riquelme
The global surge in energy demand, driven by technological advances and population growth, underscores the critical need for effective management of electricity supply and demand. In certain developing nations, a significant challenge arises because the energy demand of their population exceeds their capacity to generate, as is the case in Iraq. This study focuses on energy forecasting in Iraq, using a previously unstudied dataset from 2019 to 2021, sourced from the Iraqi Ministry of Electricity. The study employs a diverse set of advanced forecasting models, including Linear Regression, XGBoost, Random Forest, Long Short-Term Memory, Temporal Convolutional Networks, and Multi-Layer Perceptron, evaluating their performance across four distinct forecast horizons (24, 48, 72, and 168 hours ahead). Key findings reveal that Linear Regression is a consistent top performer in demand forecasting, while XGBoost excels in supply forecasting. Statistical analysis detects differences in models performances for both datasets, although no significant differences are found in pairwise comparisons for the supply dataset. This study emphasizes the importance of accurate energy forecasting for energy security, resource allocation, and policy-making in Iraq. It provides tools for decision-makers to address energy challenges, mitigate power shortages, and stimulate economic growth. It also encourages innovative forecasting methods, the use of external variables like weather and economic data, and region-specific models tailored to Iraq's energy landscape. The research contributes valuable insights into the dynamics of electricity supply and demand in Iraq and offers performance evaluations for better energy planning and management, ultimately promoting sustainable development and improving the quality of life for the Iraqi population.