matan oren

Dr. matan oren


Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
17 June 2015 in Scientific Reports
Verified
Journal Article
Open access
MOmatan oren
matan oren
ATAnn M. Tarrant
Ann M. Tarrant
SAShahar Alon
Shahar Alon
NSNoa Simon-Blecher
Noa Simon-Blecher
IEIdan Elbaz
Idan Elbaz
OLOren Levy
Oren Levy
Endogenous circadian clocks are poorly understood within early-diverging animal lineages. We have characterized circadian behavioral patterns and identified potential components of the circadian clock in the starlet sea anemone, Nematostella vectensis: a model cnidarian which lacks algal symbionts. Using automatic video tracking we showed that Nematostella exhibits rhythmic circadian locomotor activity, which is persistent in constant dark, shifted or disrupted by external dark/light cues and maintained the same rate at two different temperatures. This activity was inhibited by a casein kinase 1δ/ε inhibitor, suggesting a role for CK1 homologue(s) in Nematostella clock. Using high-throughput sequencing we profiled Nematostella transcriptomes over 48 hours under a light-dark cycle. We identified 180 Nematostella diurnally-oscillated transcripts and compared them with previously established databases of adult and larvae of the symbiotic coral Acropora millepora, revealing both shared homologues and unique rhythmic genes. Taken together, this study further establishes Nematostella as a non-symbiotic model organism to study circadian rhythms and increases our understanding about the fundamental elements of circadian regulation and their evolution within the Metazoa

11 October 2019 in Biomolecules
Verified
Journal Article
Open access
PDF file
WKWisurumuni Arachchilage Hasitha Maduranga Karunarathne
Wisurumuni Arachchilage Hasitha Maduranga Karunarathne
Neelaka MolagodaNeelaka Molagoda
Neelaka Molagoda
Myung Sook KimMyung Sook Kim
Myung Sook Kim
Yung Hyun ChoiYung Hyun Choi
Yung Hyun Choi
MOmatan oren
matan oren
Gi-Young KimGi-Young Kim
Gi-Young Kim
Flumequine is a well-known second generation quinolone antibiotic that induces phototoxicity. However, the effect of flumequine on skin melanogenesis is unclear. Therefore, we, for the first time, investigated whether flumequine regulates melanogenesis. The present study showed that flumequine slightly inhibited in vitro mushroom tyrosinase activity but significantly increased extracellular and intracellular melanin content in B16F10 cells and promoted the expression of microphthalmia-associated transcription factor (MITF) and tyrosinase. Additionally, flumequine remarkably increased melanin pigmentation in zebrafish larvae without any toxicity. We also found that flumequine stimulated p38 mitogen-activated protein kinase (MAPK) and c-Jun N-terminal kinase (JNK) phosphorylation; inhibition of p38 MAPK and JNK resulted in significant downregulation of extracellular and intracellular melanin content in B16F10 cells and pigmentation of zebrafish larvae accompanied with suppression of MITF and tyrosinase expression, indicating that flumequine-mediated p38 and JNK promote melanogenesis in vitro and in vivo. According to the molecular docking prediction, flumequine targeted dual-specificity MAPK phosphatase 16 (DUSP16), which is a major negative regulator of p38 MAPK and JNK. Our findings demonstrate that flumequine induces an increase in melanin content in B16F10 cells and zebrafish larvae by activating p38 MAPK and JNK. These data show the potential of flumequine for use as an anti-vitiligo agent.

4 April 2014 in PLOS ONE
Verified
Journal Article
Open access
PDF file
MOmatan oren
matan oren
IBItzchak Brikner
Itzchak Brikner
LALior Appelbaum
Lior Appelbaum
OLOren Levy
Oren Levy
Cnidarian nervous systems utilize chemical transmission to transfer signals through synapses and neurons. To date, ample evidence has been accumulated for the participation of neuropeptides, primarily RFamides, in neurotransmission. Yet, it is still not clear if this is the case for the classical fast neurotransmitters such as GABA, Glutamate, Acetylcholine and Monoamines. A large repertoire of cnidarian Fast Neurotransmitter related Genes (FNGs) has been recently identified in the genome of the sea anemone, Nematostella vectensis. In order to test whether FNGs are localized in cnidarian neurons, we characterized the expression patterns of eight Nematostella genes that are closely or distantly related to human central and peripheral nervous systems genes, in adult Nematostella and compared them to the RFamide localization. Our results show common expression patterns for all tested genes, in a single endodermal cell layer. These expressions did not correspond with the RFamide expressing nerve cell network. Following these results we suggest that the tested Nematostella genes may not be directly involved in vertebrate-like fast neurotransmission.

7 May 2010 in Molecular Immunology
Verified
Journal Article
Closed access
MOmatan oren
matan oren
GPGuy Paz
Guy Paz
JDJacob Douek
Jacob Douek
ARAmalia Rosner
Amalia Rosner
ZFZvi Fishelson
Zvi Fishelson
BRBaruch Rinkevich
Baruch Rinkevich

1 June 2010 in Developmental & Comparative Immunology
Verified
Journal Article
Closed access
MOmatan oren
matan oren
KAK.O. Amar
K.O. Amar
JDJ. Douek
J. Douek
Tovit RosenzweigTovit Rosenzweig
Tovit Rosenzweig
GPG. Paz
G. Paz
BRB. Rinkevich
B. Rinkevich

26 December 2021 in bioRxiv
Verified
Preprint
Open access
PDF file
KMKatherine S. Marsay
Katherine S. Marsay
YKYuri Koucherov
Yuri Koucherov
KDKeren Davidov
Keren Davidov
EIEvgenia Iankelevich-Kounio
Evgenia Iankelevich-Kounio
SISheli Itzahri
Sheli Itzahri
MOmatan oren
matan oren
Marine plastic debris serve as substrates for the colonization of a variety of prokaryote and eukaryote organisms. Of particular interest are the microorganisms that have adapted to thrive on plastic as they may contain genes, enzymes or pathways involved in the colonization or metabolism of plastics. We implemented DNA metabarcoding with nanopore MinION sequencing to compare the one-month-old biomes of hydrolysable (polyethylene terephthalate) and non-hydrolysable (polyethylene) plastics surfaces vs. those of glass and the surrounding water in a Mediterranean Sea marina. We sequenced longer 16S rRNA, 18S rRNA and ITS barcode loci for a more comprehensive taxonomic profiling of the bacterial, protist and fungal communities respectively. Long read sequencing enabled high-resolution mapping to genera and species. Using differential abundance screening we identified 32 bacteria and five eukaryotic species, that were differentially abundant on plastic compared to glass. This approach may be used in the future to characterize the plastisphere communities and to screen for microorganisms with a plastic-metabolism potential.