Xueyong Zhu

Dr. Xueyong Zhu

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 May 2020 in Science
Verified
Journal Article
Open access
PDF file
MYMeng Yuan
Meng Yuan
Nicholas WuNicholas Wu
Nicholas Wu
XZXueyong Zhu
Xueyong Zhu
CLChang-Chun D. Lee
Chang-Chun D. Lee
RSRay T. Y. So
Ray T. Y. So
IWIan A. Wilson
Ian A. Wilson
Targeting the SARS-CoV-2 spike: The surface of severe acute respiratory syndrome–coronavirus 2 (SARS-CoV-2) is decorated with trimeric spikes that bind to host cell receptors. These spikes also elicit an antibody response, so understanding antibody recognition may aid in vaccine design. Yuan et al. determined the structure of CR3022, a neutralizing antibody obtained from a convalescent SARS-CoV–infected patient, in complex with the receptor-binding domain of the SARS-CoV-2 spike. The antibody binds to an epitope conserved between SARS-CoV-2 and SARS-CoV that is distinct from the receptor-binding site. CR3022 likely binds more tightly to SARS-CoV because its epitope contains a glycan not present in SARS-CoV-2. Structural modeling showed that the epitope is only revealed when at least two of the three spike proteins are in a conformation competent to bind the receptor. Science , this issue p. 630

28 August 2020 in Science
Verified
Journal Article
Open access
PDF file
MYMeng Yuan
Meng Yuan
Hejun LiuHejun Liu
Hejun Liu
Nicholas WuNicholas Wu
Nicholas Wu
CLChang-Chun D. Lee
Chang-Chun D. Lee
XZXueyong Zhu
Xueyong Zhu
IWIan A. Wilson
Ian A. Wilson
A common theme in antibody responses: In the fight against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), antibodies are a key tool, both as potential therapeutics and to guide vaccine development. Yuan et al. focused on finding shared antibody responses, in which multiple individuals develop antibodies against the same antigen using the same genetic elements and modes of recognition. The authors identified the immunoglobulin heavy-chain variable region 3-53 gene as the most frequently used among 294 antibodies that target the receptor-binding domain (RBD) of the viral spike protein. These antibodies have few somatic mutations, and crystal structures of two neutralizing antibodies bound to the RBD show that mostly germline-encoded residues are involved in binding. The minimal affinity maturation and high potency of these antibodies is promising for vaccine design. Science , this issue p. 1119

12 February 2021 in Science
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Journal Article
Open access
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PKPaul-Albert Koenig
Paul-Albert Koenig
HDHrishikesh Das
Hrishikesh Das
Hejun LiuHejun Liu
Hejun Liu
BKBeate M. Kümmerer
Beate M. Kümmerer
FGFlorian N. Gohr
Florian N. Gohr
FSFlorian Schmidt
Florian Schmidt
A double punch against SARS-CoV-2: Monoclonal antibodies are an important weapon in the battle against COVID-19. However, these large proteins are difficult to produce in the needed quantities and at low cost. Attention has turned to nanobodies, which are aptly named, single-domain antibodies that are easier to produce and have the potential to be administered by inhalation. Koenig et al. describe four nanobodies that bind to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike protein and prevent infection of cells (see the Perspective by Saelens and Schepens). Structures show that the nanobodies target two distinct epitopes on the SARS-CoV-2 spike protein. Multivalent nanobodies neutralize virus much more potently than single nanobodies, and multivalent nanobodies that bind two epitopes prevent the emergence of viral escape mutants. Science , this issue p. eabe6230 ; see also p. 681

13 August 2021 in Science
Verified
Journal Article
Open access
PDF file
MYMeng Yuan
Meng Yuan
DHDeli Huang
Deli Huang
CLChang-Chun D. Lee
Chang-Chun D. Lee
Nicholas WuNicholas Wu
Nicholas Wu
AJAbigail Jackson
Abigail Jackson
IWIan A. Wilson
Ian A. Wilson
Defenses against SARS-CoV-2 variants: Our key defense against the COVID-19 pandemic is neutralizing antibodies against the SARS-CoV-2 virus elicited by natural infection or vaccination. Recent emerging viral variants have raised concern because of their potential to escape antibody neutralization. Wang et al . identified four antibodies from early-outbreak convalescent donors that are potent against 23 variants, including variants of concern, and characterized their binding to the spike protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Yuan et al . examined the impact of emerging mutations in the receptor-binding domain of the spike protein on binding to the host receptor ACE2 and to a range of antibodies. These studies may be helpful for developing more broadly effective vaccines and therapeutic antibodies. —VV

25 October 2019 in Science
Verified
Journal Article
Closed access
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DSDaniel Stadlbauer
Daniel Stadlbauer
XZXueyong Zhu
Xueyong Zhu
MMMeagan McMahon
Meagan McMahon
JTJackson S. Turner
Jackson S. Turner
TWTeddy J. Wohlbold
Teddy J. Wohlbold
Florian KrammerFlorian Krammer
Florian Krammer
Alternative influenza target: There is a pressing need for a broadly protective influenza vaccine that can neutralize this constantly varying, deadly virus. Stadlbauer et al. turned their attention away from the current vaccine target—the mutable hemagglutinin—and investigated an alternative, less variable virus-coat glycoprotein: neuraminidase. The authors extracted monoclonal antibodies (mAbs) from a human donor naturally infected with the H3N2 virus subtype. In mice, the mAbs were broadly protective against influenza virus A groups 1 and 2 (human, avian, and swine origin) and some influenza B viruses. These mAbs were also therapeutically effective as late as 72 hours after infection. The wide range of reactivity probably relates to the infection history of the donor, whose plasmablasts generated antibodies with long regions that insert into the active site of the neuraminidase enzyme. Science , this issue p. 499

23 March 2022 in Science Translational Medicine
Verified
Journal Article
Open access
PZPanpan Zhou
Panpan Zhou
MYMeng Yuan
Meng Yuan
GSGe Song
Ge Song
NBNathan Beutler
Nathan Beutler
NSNamir Shaabani
Namir Shaabani
RARaiees Andrabi
Raiees Andrabi
Broadly neutralizing antibodies (bnAbs) to coronaviruses (CoVs) are valuable in their own right as prophylactic and therapeutic reagents to treat diverse CoVs and as templates for rational pan-CoV vaccine design. We recently described a bnAb, CC40.8, from a CoV disease 2019 (COVID-19) convalescent donor that exhibits broad reactivity with human β-CoVs. Here, we showed that CC40.8 targets the conserved S2 stem helix region of the CoV spike fusion machinery. We determined a crystal structure of CC40.8 Fab with a SARS-CoV-2 S2 stem peptide at 1.6-Å resolution and found that the peptide adopted a mainly helical structure. Conserved residues in β-CoVs interacted with CC40.8 antibody, thereby providing a molecular basis for its broad reactivity. CC40.8 exhibited in vivo protective efficacy against SARS-CoV-2 challenge in two animal models. In both models, CC40.8-treated animals exhibited less weight loss and reduced lung viral titers compared to controls. Furthermore, we noted that CC40.8-like bnAbs are relatively rare in human COVID-19 infection, and therefore, their elicitation may require rational structure-based vaccine design strategies. Overall, our study describes a target on β-CoV spike proteins for protective antibodies that may facilitate the development of pan–β-CoV vaccines.