Locomotion mode classification is one of the most important aspects for the control of powered lower-limb prostheses. We propose a wearable capacitive sensing system for recognizing locomotion modes as an alternative solution to popular electromyography (EMG)-based systems, aiming to overcome drawbacks of the latter. Eight able-bodied subjects and five transtibial amputees were recruited for automatic classification of six common locomotion modes. The system measured ten channels of capacitance signals from the shank, the thigh, or both. With a phase-dependent linear discriminant analysis classifier and selected time-domain features, the system can achieve a satisfactory classification accuracy of 93.6% ±0.9% and 93.4% ±0.8% for able-bodied subjects and amputee subjects, respectively. The classification accuracy is comparable with that of EMG-based systems. More importantly, we verify that neuro-mechanical delay inherent in capacitive sensing does not affect the timeliness of classification decisions as the system, similar to EMG-based systems, can make multiple judgments during a gait cycle. Experimental results also indicate that capacitance signals from the thigh alone are sufficient for mode classification for both able-bodied and transtibial subjects. Our investigations demonstrate that capacitive sensing is a promising alternative to myoelectric sensing for real-time control of powered lower-limb prostheses.

Motivation: Recent studies have shown that DNA N6-methyladenine (6mA) plays an important role in epigenetic modification of eukaryotic organisms. It has been found that 6mA is closely related to embryonic development, stress response and so on. Developing a new algorithm to quickly and accurately identify 6mA sites in genomes is important for explore their biological functions. Results: In this paper, we proposed a new classification method called MM-6mAPred based on a Markov model which makes use of the transition probability between adjacent nucleotides to identify 6mA site. The sensitivity and specificity of our method are 89.32% and 90.11%, respectively. The overall accuracy of our method is 89.72%, which is 6.59% higher than that of the previous method i6mA-Pred. It indicated that, compared with the 41 nucleotide chemical properties used by i6mA-Pred, the transition probability between adjacent nucleotides can capture more discriminant sequence information. Availability and implementation: The web server of MM-6mAPred is freely accessible at http://www.insect-genome.com/MM-6mAPred/ Supplementary information: Supplementary data are available at Bioinformatics online.

Testing conditional independence (CI) for continuous variables is a fundamental but challenging task in statistics. Many tests for this task are developed and used increasingly widely by data analysts. This article reviews the current status of the nonparametric part of these tests, which assumes no parametric form for the joint continuous density function. The different ways to approach the CI are summarized. Tests are also grouped according to their data assumptions and method types. A numerical comparison is also conducted for representative tests.This article is categorized under: Statistical and Graphical Methods of Data Analysis > Analysis of High Dimensional Data Statistical and Graphical Methods of Data Analysis > Multivariate Analysis

N6-methyladenine (6mA) is an important DNA modification form associated with a wide range of biological processes. Identifying accurately 6mA sites on a genomic scale is crucial for under-standing of 6mA’s biological functions. However, the existing experimental techniques for detecting 6mA sites are cost-ineffective, which implies the great need of developing new computational methods for this problem. In this paper, we developed, without requiring any prior knowledge of 6mA and manually crafted sequence features, a deep learning framework named Deep6mA to identify DNA 6mA sites, and its performance is superior to other DNA 6mA prediction tools. Specifically, the 5-fold cross-validation on a benchmark dataset of rice gives the sensitivity and specificity of Deep6mA as 92.96% and 95.06%, respectively, and the overall prediction accuracy is 94%. Importantly, we find that the sequences with 6mA sites share similar patterns across different species. The model trained with rice data predicts well the 6mA sites of other three species:Arabidopsis thaliana,Fragaria vescaandRosa chinensiswith a prediction accuracy over 90%. In addition, we find that (1) 6mA tends to occur at GAGG motifs, which means the sequence near the 6mA site may be conservative; (2) 6mA is enriched in the TATA box of the promoter, which may be the main source of its regulating downstream gene expression.