As the number of fish reproduction studies has proliferated, so has the number of gonadal classification schemes and terms. This has made it difficult for both scientists and resource managers to communicate and for comparisons to be made among studies. We propose the adoption of a simple, universal terminology for the phases in the reproductive cycle, which can be applied to all male and female elasmobranch and teleost fishes. These phases were chosen because they define key milestones in the reproductive cycle; the phases include immature, developing, spawning capable, regressing, and regenerating. Although the temporal sequence of events during gamete development in each phase may vary among species, each phase has specific histological and physiological markers and is conceptually universal. The immature phase can occur only once. The developing phase signals entry into the gonadotropin-dependent stage of oogenesis and spermatogenesis and ultimately results in gonadal growth. The spawning capable phase includes (1) those fish with gamete development that is sufficiently advanced to allow for spawning within the current reproductive cycle and (2) batch-spawning females that show signs of previous spawns (i.e., postovulatory follicle complex) and that are also capable of additional spawns during the current cycle. Within the spawning capable phase, an actively spawning subphase is defined that corresponds to hydration and ovulation in females and spermiation in males. The regressing phase indicates completion of the reproductive cycle and, for many fish, completion of the spawning season. Fish in the regenerating phase are sexually mature but reproductively inactive. Species-specific histological criteria or classes can be incorporated within each of the universal phases, allowing for more specific divisions (subphases) while preserving the overall reproductive terminology for comparative purposes. This terminology can easily be modified for fishes with alternate reproductive strategies, such as hermaphrodites (addition of a transition phase) and livebearers (addition of a gestation phase).

Reproductive timing can be defined as the temporal pattern of reproduction over a lifetime. Although reproductive timing is highly variable in marine fishes, certain traits are universal, including sexual maturity, undergoing one or more reproductive cycles, participating in one or more spawning events within a reproductive cycle, release of eggs or offspring, aging, and death. These traits commonly occur at four temporal scales: lifetime, annual, intraseasonal, and diel. It has long been known that reproductive timing affects reproductive success, especially in terms of the onset of sexual maturity and the match or mismatch between seasonal spawning and offspring survival. However, a comprehensive understanding of variability in reproductive timing over species, populations, and temporal scales is lacking. In addition, there is a need to assess how variability in reproductive timing affects a population's resilience. Because natural selection occurs at the individual level, this necessitates an understanding of within-population (i.e., individual) variability in reproductive timing and how fishing may impact it through age truncation and size-specific selectivity or fisheries-induced evolution. In this paper, we review the temporal aspects of reproductive strategies and the four most-studied reproductive timing characteristics in fishes: sexual maturity, spawning seasonality, spawning frequency, and diel periodicity. For each characteristic, we synthesize how it has traditionally been measured, advances in understanding the underlying physiology, its role in equilibrium-based fish population dynamics, and its importance to reproductive success. We then provide a review of emerging methodology—with an emphasis on ovarian histology—to improve our ability to assess variability in reproductive timing both among populations and within populations.

Although incorporating detailed reproductive data into all stock assessments is not a practical goal, the need to understand how reproductive biology affects population productivity is being increasingly recognized. More research focused on reproductive biology—coupled with a shift towards a resilience perspective in fisheries science—is resulting in challenges to many long‐held assumptions; the emergence of important new issues; and identification of the need to improve data and methods used in reproductive studies. Typically, data for reproductive studies are based on an assessment of gonadal development, which is most accurately evaluated with histology. This special section of Marine and Coastal Fisheries contains contributions from a workshop on the gonadal histology of fishes that was held in Cadiz, Spain, during June 2009. These papers cover a wide range of species and reproductive topics while introducing improved and new histological techniques. In this introduction, we address the following needs: (1) to employ standardization, thereby improving our ability to conduct comparative studies; (2) to better understand patterns of gonadal development and spawning events over time; and (3) to move beyond the spawning stock biomass paradigm. We identify the contributions of special section papers to these topics and conclude by suggesting needs for future research and integration of reproductive data into both conceptual and quantitative models to better understand how reproductive performance affects population dynamics.

Sequential hermaphroditism is a unique reproductive strategy among teleosts that is displayed mainly in fish species living in the coral reef environment. The reproductive biology of hermaphrodites has long been intriguing; however, very little is known about the molecular pathways underlying their sex change. Here, we provide the first de novo transcriptome analyses of a hermaphrodite teleost´s undergoing sex change in its natural environment. Our study has examined relative gene expression across multiple groups—rather than just two contrasting conditions— and has allowed us to explore the differential expression patterns throughout the whole process. Our analysis has highlighted the rapid and complex genomic response of the brain associated with sex change, which is subsequently transmitted to the gonads, identifying a large number of candidate genes, some well-known and some novel, involved in the process. The present study provides strong evidence of the importance of the sex steroidogenic machinery during sex change in clownfish, with the aromatase gene playing a central role, both in the brain and the gonad. This work constitutes the first genome-wide study in a social sex-changing species and provides insights into the genetic mechanism governing social sex change and gonadal restructuring in protandrous hermaphrodites.