Thomas Baranek

Dr. Thomas Baranek


Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 May 2010 in Journal of Experimental Medicine
Verified
Journal Article
Open access
KCKarine Crozat
Karine Crozat
RGRachel Guiton
Rachel Guiton
VCVanessa Contreras
Vanessa Contreras
VFVincent Feuillet
Vincent Feuillet
CDCharles-Antoine Dutertre
Charles-Antoine Dutertre
MDMarc Dalod
Marc Dalod
Human BDCA3+ dendritic cells (DCs) were suggested to be homologous to mouse CD8α+ DCs. We demonstrate that human BDCA3+ DCs are more efficient than their BDCA1+ counterparts or plasmacytoid DCs (pDCs) in cross-presenting antigen and activating CD8+ T cells, which is similar to mouse CD8α+ DCs as compared with CD11b+ DCs or pDCs, although with more moderate differences between human DC subsets. Yet, no specific marker was known to be shared between homologous DC subsets across species. We found that XC chemokine receptor 1 (XCR1) is specifically expressed and active in mouse CD8α+, human BDCA3+, and sheep CD26+ DCs and is conserved across species. The mRNA encoding the XCR1 ligand chemokine (C motif) ligand 1 (XCL1) is selectively expressed in natural killer (NK) and CD8+ T lymphocytes at steady-state and is enhanced upon activation. Moreover, the Xcl1 mRNA is selectively expressed at high levels in central memory compared with naive CD8+ T lymphocytes. Finally, XCR1−/− mice have decreased early CD8+ T cell responses to Listeria monocytogenes infection, which is associated with higher bacterial loads early in infection. Therefore, XCR1 constitutes the first conserved specific marker for cell subsets homologous to mouse CD8α+ DCs in higher vertebrates and promotes their ability to activate early CD8+ T cell defenses against an intracellular pathogenic bacteria.

22 February 2010 in Immunological Reviews
Verified
Journal Article
Closed access
KCKarine Crozat
Karine Crozat
RGRachel Guiton
Rachel Guiton
MGMartin Guilliams
Martin Guilliams
SHSandrine Henri
Sandrine Henri
TBThomas Baranek
Thomas Baranek
MDMarc Dalod
Marc Dalod

4 September 2020 in Journal of Experimental Medicine
Verified
Journal Article
Open access
PDF file
YJYouenn Jouan
Youenn Jouan
AGAntoine Guillon
Antoine Guillon
LGLoïc Gonzalez
Loïc Gonzalez
YPYonatan Perez
Yonatan Perez
CBChloé Boisseau
Chloé Boisseau
CPChristophe Paget
Christophe Paget
COVID-19 includes lung infection ranging from mild pneumonia to life-threatening acute respiratory distress syndrome (ARDS). Dysregulated host immune response in the lung is a key feature in ARDS pathophysiology. However, cellular actors involved in COVID-19–driven ARDS are poorly understood. Here, in blood and airways of severe COVID-19 patients, we serially analyzed unconventional T cells, a heterogeneous class of T lymphocytes (MAIT, γδT, and iNKT cells) with potent antimicrobial and regulatory functions. Circulating unconventional T cells of COVID-19 patients presented with a profound and persistent phenotypic alteration. In the airways, highly activated unconventional T cells were detected, suggesting a potential contribution in the regulation of local inflammation. Finally, expression of the CD69 activation marker on blood iNKT and MAIT cells of COVID-19 patients on admission was predictive of clinical course and disease severity. Thus, COVID-19 patients present with an altered unconventional T cell biology, and further investigations will be required to precisely assess their functions during SARS–CoV-2–driven ARDS.

28 September 2006 in Stem Cells
Verified
Journal Article
Closed access
PDF file
RHRodolphe Hajj
Rodolphe Hajj
TBThomas Baranek
Thomas Baranek
RNRichard Le Naour
Richard Le Naour
PLPierre Lesimple
Pierre Lesimple
EPEdith Puchelle
Edith Puchelle
CCChristelle Coraux
Christelle Coraux
In numerous airway diseases, such as cystic fibrosis, the epithelium is severely damaged and must regenerate to restore its defense functions. Although the human airway epithelial stem cells have not been identified yet, we have suggested recently that epithelial stem/progenitor cells exist among both human fetal basal and suprabasal cell subsets in the tracheal epithelium. In this study, we analyzed the capacity of human adult basal cells isolated from human adult airway tissues to restore a well-differentiated and functional airway epithelium. To this end, we used the human-specific basal cell markers tetraspanin CD151 and tissue factor (TF) to separate positive basal cells from negative columnar cells with a FACSAria cell sorter. Sorted epithelial cells were seeded into epithelium-denuded rat tracheae that were grafted subcutaneously in nude mice and on collagen-coated porous membranes, where they were grown at the air-liquid interface. Sorted basal and columnar populations were also analyzed for their telomerase activity, a specific transit-amplifying cell marker, by the telomeric repeat amplification protocol assay. After cell sorting, the pure and viable CD151/TF-positive basal cell population proliferated on plastic and adhered on epithelium-denuded rat tracheae, as well as on collagen-coated porous membranes, where it was able to restore a fully differentiated mucociliary and functional airway epithelium, whereas viable columnar negative cells did not. Telomerase activity was detected in the CD151/TF-positive basal cell population, but not in CD151/TF-negative columnar cells. These results demonstrate that human adult basal cells are at least airway surface transit-amplifying epithelial cells.

2 April 2013 in European Journal of Immunology
Verified
Journal Article
Open access
PDF file
TMThien‐Phong Vu Manh
Thien‐Phong Vu Manh
YAYannick Alexandre
Yannick Alexandre
TBThomas Baranek
Thomas Baranek
KCKarine Crozat
Karine Crozat
MDMarc Dalod
Marc Dalod
DCs express receptors sensing microbial, danger or cytokine signals, which when triggered in combination drive DC maturation and functional polarization. Maturation was proposed to result from a discrete number of modifications in conventional DCs (cDCs), in contrast to a cell‐fate conversion in plasmacytoid DCs (pDCs). cDC maturation is generally assessed by measuring cytokine production and membrane expression of MHC class II and co‐stimulation molecules. pDC maturation complexity was demonstrated by functional genomics. Here, pDCs and cDCs were shown to undergo profound and convergent changes in their gene expression programs in vivo during viral infection. This observation was generalized to other stimulation conditions and DC subsets, by public microarray data analyses, PCR confirmation of selected gene expression profiles, and gene regulatory sequence bioinformatics analyses. Thus, maturation is a complex process similarly reshaping all DC subsets, including through the induction of a core set of NF‐κB‐ or IFN‐stimulated genes irrespective of stimuli.

1 October 2012 in Cell Host & Microbe
Verified
Journal Article
Closed access
TBThomas Baranek
Thomas Baranek
TMThien-Phong Vu Manh
Thien-Phong Vu Manh
YAYannick Alexandre
Yannick Alexandre
MMMuhammad Ahmad Maqbool
Muhammad Ahmad Maqbool
JCJoaquin Zacarias Cabeza
Joaquin Zacarias Cabeza
MDMarc Dalod
Marc Dalod