Suraj Kannan

Mr. Suraj Kannan


Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
7 August 2018 in Nature Communications
Verified
Journal Article
Open access
PAPeter Andersen
Peter Andersen
ETEmmanouil Tampakakis
Emmanouil Tampakakis
DJDennisse V. Jimenez
Dennisse V. Jimenez
SKSuraj Kannan
Suraj Kannan
MMMatthew Miyamoto
Matthew Miyamoto
CKChulan Kwon
Chulan Kwon
The discovery of the first heart field (FHF) and the second heart field (SHF) led us to understand how cardiac lineages and structures arise during development. However, it remains unknown how they are specified. Here, we generate precardiac spheroids with pluripotent stem cells (PSCs) harboring GFP/RFP reporters under the control of FHF/SHF markers, respectively. GFP+ cells and RFP+ cells appear from two distinct areas and develop in a complementary fashion. Transcriptome analysis shows a high degree of similarities with embryonic FHF/SHF cells. Bmp and Wnt are among the most differentially regulated pathways, and gain- and loss-of-function studies reveal that Bmp specifies GFP+ cells and RFP+ cells via the Bmp/Smad pathway and Wnt signaling, respectively. FHF/SHF cells can be isolated without reporters by the surface protein Cxcr4. This study provides novel insights into understanding the specification of two cardiac origins, which can be leveraged for PSC-based modeling of heart field/chamber-specific disease.

15 January 2019 in The Journal of Physiology
Verified
Journal Article
Closed access
PDF file
SKSuraj Kannan
Suraj Kannan
CKChulan Kwon
Chulan Kwon

1 November 2017 in BMJ
Verified
Journal Article
Closed access
PDF file
ZBZackary D Berger
Zackary D Berger
JBJuan P Brito
Juan P Brito
NONaykky Singh Ospina
Naykky Singh Ospina
SKSuraj Kannan
Suraj Kannan
JHJeremiah S Hinson
Jeremiah S Hinson
DNDavid E Newman-Toker
David E Newman-Toker
Shared decision making for diagnostic decisions is understudied and differs from treatment decision making. Zackary D Berger and colleagues discuss how uncertainty and stakes should shape the conversation

17 January 2018 in Biofabrication
Verified
Journal Article
Closed access
JNJanna Nawroth
Janna Nawroth
LSLisa L Scudder
Lisa L Scudder
RHRyan T. Halvorson
Ryan T. Halvorson
JTJason Tresback
Jason Tresback
JFJohn P Ferrier
John P Ferrier
KPKevin Kit Parker
Kevin Kit Parker
Organ-on-chip platforms aim to improve preclinical models for organ-level responses to novel drug compounds. Heart-on-a-chip assays in particular require tissue engineering techniques that rely on labor-intensive photolithographic fabrication or resolution-limited 3D printing of micropatterned substrates, which limits turnover and flexibility of prototyping. We present a rapid and automated method for large scale on-demand micropatterning of gelatin hydrogels for organ-on-chip applications using a novel biocompatible laser-etching approach. Fast and automated micropatterning is achieved via photosensitization of gelatin using riboflavin-5′phosphate followed by UV laser-mediated photoablation of the gel surface in user-defined patterns only limited by the resolution of the 15 μ m wide laser focal point. Using this photopatterning approach, we generated microscale surface groove and pillar structures with feature dimensions on the order of 10–30 μ m. The standard deviation of feature height was 0.3 μ m, demonstrating robustness and reproducibility. Importantly, the UV-patterning process is non-destructive and does not alter gelatin micromechanical properties. Furthermore, as a quality control step, UV-patterned heart chip substrates were seeded with rat or human cardiac myocytes, and we verified that the resulting cardiac tissues achieved structural organization, contractile function, and long-term viability comparable to manually patterned gelatin substrates. Start-to-finish, UV-patterning shortened the time required to design and manufacture micropatterned gelatin substrates for heart-on-chip applications by up to 60% compared to traditional lithography-based approaches, providing an important technological advance enroute to automated and continuous manufacturing of organ-on-chips.

17 September 2021 in PLOS Computational Biology
Verified
Journal Article
Open access
PDF file
SKSuraj Kannan
Suraj Kannan
MFMichael Farid
Michael Farid
BLBrian L. Lin
Brian L. Lin
MMMatthew Miyamoto
Matthew Miyamoto
CKChulan Kwon
Chulan Kwon
The immaturity of pluripotent stem cell (PSC)-derived tissues has emerged as a universal problem for their biomedical applications. While efforts have been made to generate adult-like cells from PSCs, direct benchmarking of PSC-derived tissues againstin vivodevelopment has not been established. Thus, maturation status is often assessed on anad-hocbasis. Single cell RNA-sequencing (scRNA-seq) offers a promising solution, though cross-study comparison is limited by dataset-specific batch effects. Here, we developed a novel approach to quantify PSC-derived cardiomyocyte (CM) maturation through transcriptomic entropy. Transcriptomic entropy is robust across datasets regardless of differences in isolation protocols, library preparation, and other potential batch effects. With this new model, we analyzed over 45 scRNA-seq datasets and over 52,000 CMs, and established a cross-study, cross-species CM maturation reference. This reference enabled us to directly compare PSC-CMs with thein vivodevelopmental trajectory and thereby to quantify PSC-CM maturation status. We further found that our entropy-based approach can be used for other cell types, including pancreatic beta cells and hepatocytes. Our study presents a biologically relevant and interpretable metric for quantifying PSC-derived tissue maturation, and is extensible to numerous tissue engineering contexts.

1 October 2021 in Seminars in Cell & Developmental Biology
Verified
Journal Article
Closed access
MMMatthew Miyamoto
Matthew Miyamoto
LNLucy Nam
Lucy Nam
SKSuraj Kannan
Suraj Kannan
CKChulan Kwon
Chulan Kwon