Subramaniam Pennathur

Dr. Subramaniam Pennathur

orcid

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 December 2020 in Science Translational Medicine
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OROren Rom
Oren Rom
YLYuhao Liu
Yuhao Liu
ZLZhipeng Liu
Zhipeng Liu
YZYing Zhao
Ying Zhao
JWJianfeng Wu
Jianfeng Wu
YCY. Eugene Chen
Y. Eugene Chen
Nonalcoholic fatty liver disease (NAFLD) including nonalcoholic steatohepatitis (NASH) has reached epidemic proportions with no pharmacological therapy approved. Lower circulating glycine is consistently reported in patients with NAFLD, but the causes for reduced glycine, its role as a causative factor, and its therapeutic potential remain unclear. We performed transcriptomics in livers from humans and mice with NAFLD and found suppression of glycine biosynthetic genes, primarily alanine-glyoxylate aminotransferase 1 (AGXT1). Genetic (Agxt1−/− mice) and dietary approaches to limit glycine availability resulted in exacerbated diet-induced hyperlipidemia and steatohepatitis, with suppressed mitochondrial/peroxisomal fatty acid β-oxidation (FAO) and enhanced inflammation as the underlying pathways. We explored glycine-based compounds with dual lipid/glucose-lowering properties as potential therapies for NAFLD and identified a tripeptide (Gly-Gly-L-Leu, DT-109) that improved body composition and lowered circulating glucose, lipids, transaminases, proinflammatory cytokines, and steatohepatitis in mice with established NASH induced by a high-fat, cholesterol, and fructose diet. We applied metagenomics, transcriptomics, and metabolomics to explore the underlying mechanisms. The bacterial genus Clostridium sensu stricto was markedly increased in mice with NASH and decreased after DT-109 treatment. DT-109 induced hepatic FAO pathways, lowered lipotoxicity, and stimulated de novo glutathione synthesis. In turn, inflammatory infiltration and hepatic fibrosis were attenuated via suppression of NF-κB target genes and TGFβ/SMAD signaling. Unlike its effects on the gut microbiome, DT-109 stimulated FAO and glutathione synthesis independent of NASH. In conclusion, impaired glycine metabolism may play a causative role in NAFLD. Glycine-based treatment attenuates experimental NAFLD by stimulating hepatic FAO and glutathione synthesis, thus warranting clinical evaluation.

22 September 2016 in JCI Insight
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KSKelli Sas
Kelli Sas
PKPradeep Kayampilly
Pradeep Kayampilly
JBJaeman Byun
Jaeman Byun
VNViji Nair
Viji Nair
LHLucy M. Hinder
Lucy M. Hinder
SPSubramaniam Pennathur
Subramaniam Pennathur
Diabetes is associated with altered cellular metabolism, but how altered metabolism contributes to the development of diabetic complications is unknown. We used the BKS db/db diabetic mouse model to investigate changes in carbohydrate and lipid metabolism in kidney cortex, peripheral nerve, and retina. A systems approach using transcriptomics, metabolomics, and metabolic flux analysis identified tissue-specific differences, with increased glucose and fatty acid metabolism in the kidney, a moderate increase in the retina, and a decrease in the nerve. In the kidney, increased metabolism was associated with enhanced protein acetylation and mitochondrial dysfunction. To confirm these findings in human disease, we analyzed diabetic kidney transcriptomic data and urinary metabolites from a cohort of Southwestern American Indians. The urinary findings were replicated in 2 independent patient cohorts, the Finnish Diabetic Nephropathy and the Family Investigation of Nephropathy and Diabetes studies. Increased concentrations of TCA cycle metabolites in urine, but not in plasma, predicted progression of diabetic kidney disease, and there was an enrichment of pathways involved in glycolysis and fatty acid and amino acid metabolism. Our findings highlight tissue-specific changes in metabolism in complication-prone tissues in diabetes and suggest that urinary TCA cycle intermediates are potential prognostic biomarkers of diabetic kidney disease progression.

16 May 2014 in Arthritis & Rheumatology
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CSCarolyne K. Smith
Carolyne K. Smith
AVAnuradha Vivekanandan‐Giri
Anuradha Vivekanandan‐Giri
CTChongren Tang
Chongren Tang
JKJason S. Knight
Jason S. Knight
Anna MathewAnna Mathew
Anna Mathew
MKMariana J. Kaplan
Mariana J. Kaplan
Objective: Oxidative stress and oxidized high‐density lipoprotein (HDL) are implicated as risk factors for cardiovascular disease (CVD) in systemic lupus erythematosus (SLE). Yet, how HDL is oxidized and rendered dysfunctional in SLE remains unclear. Neutrophil extracellular traps (NETs), the levels of which are elevated in lupus, possess oxidant‐generating enzymes, including myeloperoxidase (MPO), NADPH oxidase (NOX), and nitric oxide synthase (NOS). We hypothesized that NETs mediate HDL oxidation, impairing cholesterol efflux capacity (CEC).Methods: Plasma MPO levels and CEC activity were examined in controls and lupus patients, and 3‐chlorotyrosine (MPO specific) and 3‐nitrotyrosine (derived from reactive nitrogen species) were quantified in human HDL. Multivariable linear models were used to estimate and test differences between groups. HDL was exposed to NETs from control and lupus neutrophils in the presence or absence of MPO, NOX, NOS inhibitors, and chloroquine (CQ). Murine HDL oxidation was quantified after NET inhibition in vivo.Results: SLE patients displayed higher MPO levels and diminished CEC compared to controls. SLE HDL had higher 3‐nitrotyrosine and 3‐chlorotyrosine content than control HDL, with site‐specific oxidation signatures on apolipoprotein A‐I. Experiments with human and murine NETs confirmed that chlorination was mediated by MPO and NOX, and nitration by NOS and NOX. Mice with lupus treated with the NET inhibitor Cl‐amidine displayed significantly decreased HDL oxidation. CQ inhibited NET formation in vitro.Conclusion: Active NOS, NOX, and MPO within NETs significantly modify HDL, rendering the lipoprotein proatherogenic. Since NET formation is enhanced in SLE, these findings support a novel role for NET‐derived lipoprotein oxidation in SLE‐associated CVD and identify additional proatherogenic roles of neutrophils and putative protective roles of antimalarials in autoimmunity.

11 October 2017 in Journal of the American Society of Nephrology
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FAFarsad Afshinnia
Farsad Afshinnia
TRThekkelnaycke M. Rajendiran
Thekkelnaycke M. Rajendiran
TSTanu Soni
Tanu Soni
JBJaeman Byun
Jaeman Byun
SWStefanie Wernisch
Stefanie Wernisch
SPSubramaniam Pennathur
Subramaniam Pennathur
Studies of lipids in CKD, including ESRD, have been limited to measures of conventional lipid profiles. We aimed to systematically identify 17 different lipid classes and associate the abundance thereof with alterations in acylcarnitines, a metric of β -oxidation, across stages of CKD. From the Clinical Phenotyping Resource and Biobank Core (CPROBE) cohort of 1235 adults, we selected a panel of 214 participants: 36 with stage 1 or 2 CKD, 99 with stage 3 CKD, 61 with stage 4 CKD, and 18 with stage 5 CKD. Among participants, 110 were men (51.4%), 64 were black (29.9%), and 150 were white (70.1%), and the mean (SD) age was 60 (16) years old. We measured plasma lipids and acylcarnitines using liquid chromatography-mass spectrometry. Overall, we identified 330 different lipids across 17 different classes. Compared with earlier stages, stage 5 CKD associated with a higher abundance of saturated C16–C20 free fatty acids (FFAs) and long polyunsaturated complex lipids. Long-chain–to–intermediate-chain acylcarnitine ratio, a marker of efficiency of β -oxidation, exhibited a graded decrease from stage 2 to 5 CKD ( P <0.001). Additionally, multiple linear regression revealed that the long-chain–to–intermediate-chain acylcarnitine ratio inversely associated with polyunsaturated long complex lipid subclasses and the C16–C20 FFAs but directly associated with short complex lipids with fewer double bonds. We conclude that increased abundance of saturated C16–C20 FFAs coupled with impaired β -oxidation of FFAs and inverse partitioning into complex lipids may be mechanisms underpinning lipid metabolism changes that typify advancing CKD.

6 October 2021 in Nature Reviews Nephrology
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JBJudy Baek
Judy Baek
CHChenchen He
Chenchen He
Farsad AfshinniaFarsad Afshinnia
Farsad Afshinnia
GMGeorge Michailidis
George Michailidis
SPSubramaniam Pennathur
Subramaniam Pennathur

1 September 2010 in Seminars in Nephrology
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Journal Article
Closed access
JWJeffrey H. Wang
Jeffrey H. Wang
JBJaeman Byun
Jaeman Byun
SPSubramaniam Pennathur
Subramaniam Pennathur