Humberto Herrera-Ubaldo

Dr. Humberto Herrera-Ubaldo

orcid

Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
7 April 2017 in PLOS Genetics
Verified
Journal Article
Open access
PDF file
JRJ. Irepan Reyes-Olalde
J. Irepan Reyes-Olalde
VZVíctor M. Zúñiga-Mayo
Víctor M. Zúñiga-Mayo
JSJoanna Serwatowska
Joanna Serwatowska
RMRicardo A. Chávez Montes
Ricardo A. Chávez Montes
PLPaulina Lozano-Sotomayor
Paulina Lozano-Sotomayor
SFStefan De Folter
Stefan De Folter
Fruits and seeds are the major food source on earth. Both derive from the gynoecium and, therefore, it is crucial to understand the mechanisms that guide the development of this organ of angiosperm species. In Arabidopsis, the gynoecium is composed of two congenitally fused carpels, where two domains: medial and lateral, can be distinguished. The medial domain includes the carpel margin meristem (CMM) that is key for the production of the internal tissues involved in fertilization, such as septum, ovules, and transmitting tract. Interestingly, the medial domain shows a high cytokinin signaling output, in contrast to the lateral domain, where it is hardly detected. While it is known that cytokinin provides meristematic properties, understanding on the mechanisms that underlie the cytokinin signaling pattern in the young gynoecium is lacking. Moreover, in other tissues, the cytokinin pathway is often connected to the auxin pathway, but we also lack knowledge about these connections in the young gynoecium. Our results reveal that cytokinin signaling, that can provide meristematic properties required for CMM activity and growth, is enabled by the transcription factor SPATULA (SPT) in the medial domain. Meanwhile, cytokinin signaling is confined to the medial domain by the cytokinin response repressor ARABIDOPSIS HISTIDINE PHOSPHOTRANSFERASE 6 (AHP6), and perhaps by ARR16 (a type-A ARR) as well, both present in the lateral domains (presumptive valves) of the developing gynoecia. Moreover, SPT and cytokinin, probably together, promote the expression of the auxin biosynthetic gene TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1 (TAA1) and the gene encoding the auxin efflux transporter PIN-FORMED 3 (PIN3), likely creating auxin drainage important for gynoecium growth. This study provides novel insights in the spatiotemporal determination of the cytokinin signaling pattern and its connection to the auxin pathway in the young gynoecium. Most of our food comes from fruits and seeds, derived from a fertilized gynoecium. Therefore, understanding the mechanisms that control gynoecium development is of crucial importance. The Arabidopsis gynoecium has two fused carpels, with a medial domain between them, and a lateral domain consisting of the carpel walls. All the tissues that are involved in reproduction arise from the carpel margin meristem in the medial domain. The phytohormone cytokinin provides meristematic activity to cells, and interestingly, in a young gynoecium, the medial, but not the lateral, domain presents strong cytokinin signaling. One question that comes to mind is how this pattern is defined. This work demonstrates that the transcription factor SPATULA enables cytokinin signaling at the medial domain, while cytokinin signaling repressors are present in the lateral domain. A second question is whether and how cytokinin in the medial domain communicates with auxin, an important phytohormone for tissue differentiation. We found that cytokinin and SPT activate auxin biosynthesis and transport genes. The integration of these findings gives the first gene regulatory network acting during early gynoecium development. This network is most likely conserved in flowering plants, and can provide insights of molecular processes that are key for food production.

1 February 2020 in Cell Reports
Verified
Journal Article
Open access
MMMaurizio Di Marzo
Maurizio Di Marzo
HHHumberto Herrera-Ubaldo
Humberto Herrera-Ubaldo
ECElisabetta Caporali
Elisabetta Caporali
Ondrej NovakOndrej Novak
Ondrej Novak
MSMiroslav Strnad
Miroslav Strnad
LCLucia Colombo
Lucia Colombo
Upon fertilization, the ovary increases in size and undergoes a complex developmental process to become a fruit. We show that cytokinins (CKs), which are required to determine ovary size before fertilization, have to be degraded to facilitate fruit growth. The expression of CKX7, which encodes a cytosolic CK-degrading enzyme, is directly positively regulated post-fertilization by the MADS-box transcription factor STK. Similar to stk, two ckx7 mutants possess shorter fruits than wild type. Quantification of CKs reveals that stk and ckx7 mutants have high CK levels, which negatively control cell expansion during fruit development, compromising fruit growth. Overexpression of CKX7 partially complements the stk fruit phenotype, confirming a role for CK degradation in fruit development. Finally, we show that STK is required for the expression of FUL, which is essential for valve elongation. Overall, we provide insights into the link between CKs and molecular pathways that control fruit growth.

15 July 2014 in The Plant Journal
Verified
Journal Article
Open access
PDF file
NMNayelli Marsch-Martinez
Nayelli Marsch-Martinez
VZVíctor M. Zúñiga‐Mayo
Víctor M. Zúñiga‐Mayo
HHHumberto Herrera-Ubaldo
Humberto Herrera-Ubaldo
POPieter B. F. Ouwerkerk
Pieter B. F. Ouwerkerk
JPJeanneth Pablo‐Villa
Jeanneth Pablo‐Villa
SFStefan De Folter
Stefan De Folter
Summary: Fruits are complex plant structures that nurture seeds and facilitate their dispersal. The Arabidopsis fruit is termed silique. It develops from the gynoecium, which has a stigma, a style, an ovary containing the ovules, and a gynophore. Externally, the ovary consists of two valves, and their margins lay adjacent to the replum, which is connected to the septum that internally divides the ovary. In this work we describe the role for the zinc‐finger transcription factor NO TRANSMITTING TRACT (NTT) in replum development. NTT loss of function leads to reduced replum width and cell number, whereas increased expression promotes replum enlargement. NTT activates the homeobox gene BP, which, together with RPL, is important for replum development. In addition, the NTT protein is able to bind the BP promoter in yeast, and when this binding region is not present, NTT fails to activate BP in the replum. Furthermore, NTT interacts with itself and different proteins involved in fruit development: RPL, STM, FUL, SHP1 and SHP2 in yeast and in planta. Moreover, its genetic interactions provide further evidence about its biological relevance in replum development.

28 February 2022 in Development
Verified
Journal Article
Open access
PDF file
HHHumberto Herrera-Ubaldo
Humberto Herrera-Ubaldo
SFStefan De Folter
Stefan De Folter
Flowering plants produce flowers and one of the most complex floral structures is the pistil or the gynoecium. All the floral organs differentiate from the floral meristem. Various reviews exist on molecular mechanisms controlling reproductive development, but most focus on a short time window and there has been no recent review on the complete developmental time frame of gynoecium and fruit formation. Here, we highlight recent discoveries, including the players, interactions and mechanisms that govern gynoecium and fruit development in Arabidopsis. We also present the currently known gene regulatory networks from gynoecium initiation until fruit maturation.

24 October 2019 in Frontiers in Plant Science
Verified
Journal Article
Open access
PDF file
FCFrancesca Caselli
Francesca Caselli
VBVeronica Maria Beretta
Veronica Maria Beretta
OMOtho Mantegazza
Otho Mantegazza
RPRosanna Petrella
Rosanna Petrella
GLGiulia Leo
Giulia Leo
VGVeronica Gregis
Veronica Gregis
The REproductive Meristem (REM) gene family encodes for transcription factors belonging to the B3 DNA binding domain superfamily. In Arabidopsis thaliana, the REM gene family is composed of 45 members, preferentially expressed during flower, ovule, and seed developments. Only a few members of this family have been functionally characterized: VERNALIZATION1 (VRN1) and, most recently, TARGET OF FLC AND SVP1 (TFS1) regulate flowering time and VERDANDI (VDD), together with VALKYRIE (VAL) that control the death of the receptive synergid cell in the female gametophyte. We investigated the role of REM34, REM35, and REM36, three closely related and linked genes similarly expressed in both female and male gametophytes. Simultaneous silencing by RNA interference (RNAi) caused about 50% of the ovules to remain unfertilized. Careful evaluation of both ovule and pollen developments showed that this partial sterility of the transgenic RNAi lines was due to a postmeiotic block in both female and male gametophytes. Furthermore, protein interaction assays revealed that REM34 and REM35 interact, which suggests that they work together during the first stages of gametogenesis.

2 February 2019 in Journal of Experimental Botany
Verified
Journal Article
Closed access
VZVictor M Zúñiga-Mayo
Victor M Zúñiga-Mayo
AGAndrea Gómez-Felipe
Andrea Gómez-Felipe
HHHumberto Herrera-Ubaldo
Humberto Herrera-Ubaldo
SFStefan De Folter
Stefan De Folter
Life has always found a way to preserve itself. One strategy that has been developed for this purpose is sexual reproduction. In land plants, the gynoecium is considered to be at the top of evolutionary innovation, since it has been a key factor in the success of the angiosperms. The gynoecium is composed of carpels with different tissues that need to develop and differentiate in the correct way. In order to control and guide gynoecium development, plants have adapted elements of pre-existing gene regulatory networks (GRNs) but new ones have also evolved. The GRNs can interact with internal factors (e.g. hormones and other metabolites) and external factors (e.g. mechanical signals and temperature) at different levels, giving robustness and flexibility to gynoecium development. Here, we review recent findings regarding the role of cytokinin-auxin crosstalk and the genes that connect these hormonal pathways during early gynoecium development. We also discuss some examples of internal and external factors that can modify GRNs. Finally, we make a journey through the flowering plant lineage to determine how conserved are these GRNs that regulate gynoecium and fruit development.