Raghavan Varadarajan

Dr. Raghavan Varadarajan

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Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 April 2019 in Protein Science
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Journal Article
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GCGopinath Chattopadhyay
Gopinath Chattopadhyay
RVRaghavan Varadarajan
Raghavan Varadarajan
With advancements in high‐throughput generation of phenotypic data on mutant proteins, it has become important to individually characterize different proteins or their variants rapidly and with minimal sample consumption. We have made use of a nano differential scanning fluorimetric device, from NanoTemper technologies, to rapidly carry out isothermal chemical denaturation and measure folding/unfolding kinetics of proteins and compared these to corresponding data obtained from conventional spectrofluorimetry. We show that using sample volumes 10‐50‐fold lower than with conventional fluorimetric techniques, one can rapidly and accurately measure thermodynamic and kinetic stability, as well as folding/unfolding kinetics. This method also facilitates characterization of proteins that are difficult to express and purify.

14 July 2021 in ACS Infectious Diseases
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Journal Article
Open access
SMSameer Kumar Malladi
Sameer Kumar Malladi
UPUnnatiben Rajeshbhai Patel
Unnatiben Rajeshbhai Patel
RRRaju S. Rajmani
Raju S. Rajmani
Randhir SinghRandhir Singh
Randhir Singh
SPSuman Pandey
Suman Pandey
RVRaghavan Varadarajan
Raghavan Varadarajan
The receptor binding domain (RBD) of SARS-CoV-2 is the primary target of neutralizing antibodies. We designed a trimeric, highly thermotolerant glycan engineered RBD by fusion to a heterologous, poorly immunogenic disulfide linked trimerization domain derived from cartilage matrix protein. The protein expressed at a yield of ∼80–100 mg/L in transiently transfected Expi293 cells, as well as CHO and HEK293 stable cell lines and formed homogeneous disulfide-linked trimers. When lyophilized, these possessed remarkable functional stability to transient thermal stress of up to 100 °C and were stable to long-term storage of over 4 weeks at 37 °C unlike an alternative RBD-trimer with a different trimerization domain. Two intramuscular immunizations with a human-compatible SWE adjuvanted formulation elicited antibodies with pseudoviral neutralizing titers in guinea pigs and mice that were 25–250 fold higher than corresponding values in human convalescent sera. Against the beta (B.1.351) variant of concern (VOC), pseudoviral neutralization titers for RBD trimer were ∼3-fold lower than against wildtype B.1 virus. RBD was also displayed on a designed ferritin-like Msdps2 nanoparticle. This showed decreased yield and immunogenicity relative to trimeric RBD. Replicative virus neutralization assays using mouse sera demonstrated that antibodies induced by the trimers neutralized all four VOC to date, namely B.1.1.7, B.1.351, P.1, and B.1.617.2 without significant differences. Trimeric RBD immunized hamsters were protected from viral challenge. The excellent immunogenicity, thermotolerance, and high yield of these immunogens suggest that they are a promising modality to combat COVID-19, including all SARS-CoV-2 VOC to date.

5 June 2020 in Science Advances
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SASakshi Agarwal
Sakshi Agarwal
ASArun Sharma
Arun Sharma
RBRania Bouzeyen
Rania Bouzeyen
ADAmar Deep
Amar Deep
HSHarsh Sharma
Harsh Sharma
RSRamandeep Singh
Ramandeep Singh
The VapBC22 toxin-antitoxin system regulates adaptation to oxidative stress and virulence in Mycobacterium tuberculosis .

1 January 2021 in Journal of Biological Chemistry
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SMSameer Kumar Malladi
Sameer Kumar Malladi
RSRandhir Singh
Randhir Singh
SPSuman Pandey
Suman Pandey
SGSavitha Gayathri
Savitha Gayathri
KKKawkab Kanjo
Kawkab Kanjo
RVRaghavan Varadarajan
Raghavan Varadarajan
Virtually all SARS-CoV-2 vaccines currently in clinical testing are stored in a refrigerated or frozen state prior to use. This is a major impediment to deployment in resource-poor settings. Furthermore, several of them use viral vectors or mRNA. In contrast to protein subunit vaccines, there is limited manufacturing expertise for these nucleic-acid-based modalities, especially in the developing world. Neutralizing antibodies, the clearest known correlate of protection against SARS-CoV-2, are primarily directed against the receptor-binding domain (RBD) of the viral spike protein, suggesting that a suitable RBD construct might serve as a more accessible vaccine ingredient. We describe a monomeric, glycan-engineered RBD protein fragment that is expressed at a purified yield of 214 mg/l in unoptimized, mammalian cell culture and, in contrast to a stabilized spike ectodomain, is tolerant of exposure to temperatures as high as 100 °C when lyophilized, up to 70 °C in solution and stable for over 4 weeks at 37 °C. In prime:boost guinea pig immunizations, when formulated with the MF59-like adjuvant AddaVax, the RBD derivative elicited neutralizing antibodies with an endpoint geometric mean titer of ∼415 against replicative virus, comparing favorably with several vaccine formulations currently in the clinic. These features of high yield, extreme thermotolerance, and satisfactory immunogenicity suggest that such RBD subunit vaccine formulations hold great promise to combat COVID-19.

1 June 2018 in Current Opinion in Structural Biology
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Journal Article
Closed access
KGKritika Gupta
Kritika Gupta
RVRaghavan Varadarajan
Raghavan Varadarajan

13 July 2018 in Biochemistry
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Journal Article
Closed access
BSBenjamin Selmke
Benjamin Selmke
PBPeter P. Borbat
Peter P. Borbat
CNChen Nickolaus
Chen Nickolaus
RVRaghavan Varadarajan
Raghavan Varadarajan
JFJack H. Freed
Jack H. Freed
WTWolfgang E. Trommer
Wolfgang E. Trommer