Shun-ichi Tanaka

Prof. Dr. Shun-ichi Tanaka


Research Focus & Metrics

Academic Career Length

35Years (1992-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 January 2021 in Molecules
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Journal Article
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SCSomang Choi
Somang Choi
STShun-ichi Tanaka
Shun-ichi Tanaka
KTKazufumi Takano
Kazufumi Takano
8-Anilino-1-naphthalenesulfonic acid (ANS) is used as a hydrophobic fluorescence probe due to its high intensity in hydrophobic environments, and also as a microenvironment probe because of its unique ability to exhibit peak shift and intensity change depending on the surrounding solvent environment. The difference in fluorescence can not only be caused by the microenvironment but can also be affected by the binding affinity, which is represented by the binding constant (K). However, the overall binding process considering the binding constant is not fully understood, which requires the ANS fluorescence binding mechanism to be examined. In this study, to reveal the rate-limiting step of the ANS–protein binding process, protein concentration-dependent measurements of the ANS fluorescence of lysozyme and bovine serum albumin were performed, and the binding constants were analyzed. The results suggest that the main factor of the binding process is the microenvironment at the binding site, which restricts the attached ANS molecule, rather than the attractive diffusion-limited association. The molecular mechanism of ANS–protein binding will help us to interpret the molecular motions of ANS molecules at the binding site in detail, especially with respect to an equilibrium perspective.

10 July 2023 in Nature Communications
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JFJunso Fujita
Junso Fujita
HAHiroshi Amesaka
Hiroshi Amesaka
TYTakuya Yoshizawa
Takuya Yoshizawa
KHKota Hibino
Kota Hibino
NKNatsuki Kamimura
Natsuki Kamimura
HMHiroyoshi Matsumura
Hiroyoshi Matsumura
FtsZ polymerizes into protofilaments to form the Z-ring that acts as a scaffold for accessory proteins during cell division. Structures of FtsZ have been previously solved, but detailed mechanistic insights are lacking. Here, we determine the cryoEM structure of a single protofilament of FtsZ from Klebsiella pneumoniae (KpFtsZ) in a polymerization-preferred conformation. We also develop a monobody (Mb) that binds to KpFtsZ and FtsZ from Escherichia coli without affecting their GTPase activity. Crystal structures of the FtsZ–Mb complexes reveal the Mb binding mode, while addition of Mb in vivo inhibits cell division. A cryoEM structure of a double-helical tube of KpFtsZ–Mb at 2.7 Å resolution shows two parallel protofilaments. Our present study highlights the physiological roles of the conformational changes of FtsZ in treadmilling that regulate cell division.

4 July 2023 in Journal of Biological Chemistry
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Journal Article
Open access
AMAyako Mizuno
Ayako Mizuno
TTTadashi Toyoma
Tadashi Toyoma
AIAtsuya Ichikawa
Atsuya Ichikawa
NSNaoko Sakai
Naoko Sakai
YYYuya Yoshioka
Yuya Yoshioka
Yoshiro SaitoYoshiro Saito
Yoshiro Saito
Selenoprotein P (SeP, encoded by the SELENOP gene) is a plasma protein that contains selenium in the form of selenocysteine residues (Sec, a cysteine analog containing selenium instead of sulfur). SeP functions for the transport of selenium to specific tissues in a receptor-dependent manner. Apolipoprotein E receptor 2 (ApoER2) has been identified as a SeP receptor. However, diverse variants of ApoER2 have been reported, and the details of its tissue specificity and the molecular mechanism of its efficiency remain unclear. In the present study, we found that human T lymphoma Jurkat cells have a high ability to utilize selenium via SeP, while this ability was low in human rhabdomyosarcoma cells. We identified an ApoER2 variant with a high affinity for SeP in Jurkat cells. This variant had a dissociation constant value of 0.67 nM and a highly glycosylated O-linked sugar domain. Moreover, the acidification of intracellular vesicles was necessary for selenium transport via SeP in both cell types. In rhabdomyosarcoma cells, SeP underwent proteolytic degradation in lysosomes and transported selenium in a Sec lyase–dependent manner. However, in Jurkat cells, SeP transported selenium in Sec lyase–independent manner. These findings indicate a preferential selenium transport pathway involving SeP and high-affinity ApoER2 in a Sec lyase–independent manner. Herein, we provide a novel dynamic transport pathway for selenium via SeP.

1 July 1997 in Vaccine
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Journal Article
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KOKenji Okuda
Kenji Okuda
KXKe-Qin Xin
Ke-Qin Xin
TTTakashi Tsuji
Takashi Tsuji
HBHiroki Bukawa
Hiroki Bukawa
STShun-ichi Tanaka
Shun-ichi Tanaka
Jun FukushimaJun Fukushima
Jun Fukushima

14 May 2018 in ACS Chemical Biology
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Journal Article
Closed access
STShun-ichi Tanaka
Shun-ichi Tanaka
TTTetsuya Takahashi
Tetsuya Takahashi
AKAkiko Koide
Akiko Koide
RIRiki Iwamoto
Riki Iwamoto
SKSatoshi Koikeda
Satoshi Koikeda
SKShohei Koide
Shohei Koide

1 November 1995 in Radiation Protection Dosimetry
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OSO. Sato
O. Sato
SISatoshi Iwai
Satoshi Iwai
STShun-ichi Tanaka
Shun-ichi Tanaka
TUTakashi Uehara
Takashi Uehara
YSY. Sakamoto
Y. Sakamoto
SFS. Furihata
S. Furihata
A calculational method is presented to evaluate equivalent doses of tissues or organs and effective dose for high energy radiations, where the radiation weighting factor given in ICRP 60 was replaced by an average quality factor estimated from the Q-L relationship in ICRP 60. The equivalent doses of tissues or organs and fluence to effective dose conversion coefficients are calculated for photons up to 10 GeV with a Monte Carlo code EGS4 in which a mathematical model of an anthropomorphic phantom is included. The equivalent doses for 24 tissue and organs have been calculated for AP and PA incidence of aligned and expanded photons from 1 MeV to 10 GeV. The effective doses were obtained by summing the equivalent doses with tissue weighting factors from ICRP 60. It is also demonstrated that the kerma approximation overestimates significantly the effective dose for photons above 10 MeV.