Sustainable farmland management is vital for global food security and for mitigating environmental degradation and climate change. While individual practices such as crop rotation and no-tillage are well-documented, this review synthesizes current evidence to illuminate the critical synergistic effects of integrating four key strategies: crop rotation, conservation tillage, organic amendments, and soil microbiome management. Crop rotation enhances nutrient cycling and disrupts pest cycles, while conservation tillage preserves soil structure, reduces erosion, and promotes carbon sequestration. Organic amendments replenish soil organic matter and stimulate biological activity, and a healthy soil microbiome boosts plant resilience to stress and enhances nutrient acquisition through key functional groups like arbuscular mycorrhizal fungi (AMFs). Critically, the integration of these practices yields amplified benefits that far exceed their individual contributions. Integrated management systems not only significantly increase crop yields (by up to 15–30%) and soil organic carbon but also deliver profound global ecosystem services, with a potential to sequester 2.17 billion tons of CO₂ and reduce soil erosion by 2.41 billion tons annually. Despite challenges such as initial yield variability, leveraging these synergies through precision agriculture represents the future direction for the field. This review concludes that a holistic, systems-level approach is essential for building regenerative and climate-resilient agroecosystems.

The purpose of this study was to clarify the effects of biochar on the diversity of bacteria and fungi in the rice root zone and to reveal the changes in soil microbial community structure in the root zone after biochar application to provide a scientific basis for the improvement of albic soil. Rice and corn stalk biochar were mixed with albic soil in a pot experiment. Soil samples were collected at the rice maturity stage, soil nutrients were determined, and genomic DNA was extracted. The library was established using polymerase chain reaction (PCR) amplification. The abundance, diversity index, and community structure of the soil bacterial 16SrRNA gene V3 + V4 region and the fungal internal transcribed spacer-1 (ITS1) region were analyzed using Illumina second-generation high-throughput sequencing technology on the MiSeq platform with related bioinformatics. The results revealed that the biochar increased the soil nutrient content of albic soil. The bacteria ACE indexes of treatments of rice straw biochar (SD) and corn straw biochar (SY) were increased by 3.10% and 2.06%, respectively, and the fungi ACE and Chao indices of SD were increased by 7.86% and 14.16%, respectively, compared to conventional control treatment with no biochar (SBCK). The numbers of bacterial and fungal operational taxonomic units (OUT) in SD and SY were increased, respectively, compared to that of SBCK. The relationship between soil bacteria and fungi in the biochar-treated groups was stronger than that in the SBCK. The bacterial and fungal populations were correlated with soil nutrients, which suggested that the impacts of biochar on the soil bacteria and fungi community were indirectly driven by alternation of soil nutrient characteristics. The addition of two types of biochar altered the soil microbial community structure and the effect of rice straw biochar treatment on SD was more pronounced. This study aimed to provide a reference and basic understanding for albic soil improvement by biochar, with good application prospects.

Climate change is intensifying the co-occurrence of drought and heat stresses, which substantially constrain global crop yields and threaten food security. Developing climate–resilient crop varieties requires a comprehensive understanding of the physiological and molecular mechanisms underlying combined drought–heat stress tolerance. This review systematically summarizes recent advances in integrating multi-scale remote-sensing phenomics with multi-omics approaches—genomics, transcriptomics, proteomics, and metabolomics—to elucidate stress response pathways and identify adaptive traits. High-throughput phenotyping platforms, including satellites, UAVs, and ground-based sensors, enable non-invasive assessment of key stress indicators such as canopy temperature, vegetation indices, and chlorophyll fluorescence. Concurrently, omics studies have revealed central regulatory networks, including the ABA–SnRK2 signaling cascade, HSF–HSP chaperone systems, and ROS-scavenging pathways. Emerging frameworks integrating genotype × environment × phenotype (G × E × P) interactions, powered by machine learning and deep learning algorithms, are facilitating the discovery of functional genes and predictive phenotypes. This “pixels-to-proteins” paradigm bridges field-scale phenotypes with molecular responses, offering actionable insights for breeding, precision management, and the development of digital twin systems for climate-smart agriculture. We highlight current challenges, including data standardization and cross-platform integration, and propose future research directions to accelerate the deployment of resilient crop varieties.

The sustainable management of farmland soils is fundamental to addressing the intertwined challenges of food security, environmental degradation, and climate change. This review synthesizes current knowledge on key management practices—crop rotation, no-tillage agriculture, organic amendments (specifically farmyard manure), and soil microbiome regulation—and their synergistic effects on soil health and crop productivity. Crop rotation disrupts pest and disease cycles, enhances nutrient cycling, and stabilizes yields. No-tillage improves soil physical properties, promotes carbon sequestration, and supports more diverse and resilient microbial communities. Organic amendments enrich soil organic matter, stimulate microbial-mediated nutrient cycling, and improve soil fertility over the long term. Targeted management of soil microbiomes further boosts plant stress resistance, nutrient acquisition, and disease suppression, offering powerful avenues for ecosystem resilience. Critically, the integration of these practices amplifies their individual benefits. Systems that combine rotation with no-tillage, or organic amendments with conservation practices, demonstrate superior performance in enhancing soil structure, nutrient dynamics, biological diversity, and carbon storage. Precision agriculture technologies and microbiome-based interventions are poised to refine these integrated systems further, enabling site-specific optimization. Despite technical and operational challenges—such as early-stage yield variability and management complexities—synergistic soil health management offers a clear pathway toward regenerative, climate-resilient agriculture. Future research must focus on understanding microbial functional dynamics, advancing real-time soil health monitoring, and developing holistic, scalable strategies that align productivity goals with ecological stewardship. An integrated, ecosystem-based approach to farmland management is essential to achieve sustainable agricultural development and global carbon neutrality targets.

Rice (Oryza sativa L.) is highly sensitive to cold stress, which leads to large reductions in rice yield at the booting stage. In this study, Kongyu131 and Kenjiandao6 rice cultivars with different levels of cold stress sensitivity were sprayed with diethylaminoethyl hexanoate (DA-6) concentrations of 500, 200, 20, 2, 0.2, and 0 mg/L one day before undergoing cold water stress (CWS). We analyzed changes in yield and its factors, dry matter production, stem characteristics, and physiological and biochemical characteristics of the rice plants. The results showed that DA-6 increased peroxidase activity, delayed nitrogen and chlorophyll degradation, maintained soluble protein and potassium contents, and suppressed the accumulation of malondialdehyde in the leaves of both cultivars under CWS. DA-6 also increased the phosphorous content and superoxide dismutase activity in Kenjiandao6 under CWS; however, in Kongyu131, DA-6 increased the soluble sugar content. In addition, DA-6 treatment increased the weight of the panicle at maturity, and of the leaf, panicle, and stem-sheath at heading in both cultivars. The lengths of the panicle, the top first internode, the export rate of stem-sheath, translocation rate of stem-sheath, and export of stem-sheath from heading to maturity were increased in Kenjiandao6; however, in Kongyu131, DA-6 increased the dry weight ratio of panicle to total plant and reduced the dry weight ratio of stem-sheath to total plant at maturity. Furthermore, DA-6 improved yield in both cultivars, mainly by increasing the grain weight in the inferior grains (IG) and middle grains (MG) under CWS. DA-6 increased the grain weight in the IG and MG in Kenjiandao6 mainly by enhancing the seed setting rate and number of filled grains (NFG) in the IG and MG, and in Kongyu131 by improving the NFG in MG and IG. The optimal concentration of DA-6 to alleviate CWS was 2 mg/L. In conclusion, exogenous DA-6 was effective for maintaining dry matter production and physiology in two early japonica rice cultivars under CWS at booting, thereby improving cold tolerance and enhancing yield. The less cold-tolerant cultivar Kenjiandao6 was more sensitive to the effects of DA-6 and displayed better results than the more cold-tolerant cultivar Kongyu131.

Dry direct-seeded rice cultivation is a simple and labor-saving planting method wherein the combined application of organic and inorganic fertilizers can improve yield. However, the effects of combined fertilizers on soil properties and bacteria in dry direct-seeded rice paddy soil are unclear. Here, four treatments, conventional fertilization (NPK), seaweed bio-organic fertilizer + NPK, Jishiwang bio-organic fertilizer + NPK, and attapulgite organic fertilizer + NPK applied for three consecutive years were tested to explore their effects on soil physical, chemical, and bacterial community characteristics in a dry direct-seeded rice paddy field. The combined fertilizers increased alkaline hydrolysis-nitrogen and available potassium while decreasing the bulk density and pH; in addition, a marked increase in the relative abundance of soil macroaggregates (>5 mm) and clay particles and a decrease in that of sand was observed. Urease and neutral phosphatase activities were the highest with the Jishiwang organic fertilizer + NPK, whereas invertase and catalase activities were the highest with attapulgite organic fertilizer + NPK. All combined fertilizers considerably increased the bacterial richness index (ACE) and Chao index; Jishiwang bio-organic fertilizer + NPK also increased the Simpson index, whereas the seaweed bio-organic fertilizer + NPK reduced it. Proteobacteria and Acidobacteria accounted for 54.25–70.49% of the total bacterial relative abundance. The relative abundance of Verrucomicrobia, Chloroflexi, Firmicutes, and Nitrospirae increased with the combined fertilizers. The correlation network analysis showed predominant antagonistic relationships. A redundancy analysis demonstrated that total nitrogen, soil organic matter, urease, and invertase were the main environmental factors affecting bacterial composition. Combined fertilizers may improve soil physical and chemical properties, fertility, and bacterial richness.