Shih-Shun Lin

Dr. Shih-Shun Lin

orcid

Research Focus & Metrics

Academic Career Length

27Years (2000-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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29 June 2006 in Nature Protocols
Verified
Journal Article
Closed access
XZXiuren Zhang
Xiuren Zhang
RHRossana Henriques
Rossana Henriques
Shih-Shun LinShih-Shun Lin
Shih-Shun Lin
QNQi-Wen Niu
Qi-Wen Niu
NCNam-Hai Chua
Nam-Hai Chua

1 December 2006 in Genes & Development
Verified
Journal Article
Closed access
PDF file
XZXiuren Zhang
Xiuren Zhang
YYYu-Ren Yuan
Yu-Ren Yuan
YPYi Pei
Yi Pei
Shih-Shun LinShih-Shun Lin
Shih-Shun Lin
TTThomas Tuschl
Thomas Tuschl
NCNam-Hai Chua
Nam-Hai Chua
RNA silencing refers to small regulatory RNA-mediated processes that repress endogenous gene expression and defend hosts from offending viruses. As an anti-host defense mechanism, viruses encode suppressors that can block RNA silencing pathways. Cucumber mosaic virus (CMV)-encoded 2b protein was among the first suppressors identified that could inhibit post-transcriptional gene silencing (PTGS), but with little or no effect on miRNA functions. The mechanisms underlying 2b suppression of RNA silencing are unknown. Here, we demonstrate that the CMV 2b protein also interferes with miRNA pathways, eliciting developmental anomalies partially phenocopying ago1 mutant alleles. In contrast to most characterized suppressors, 2b directly interacts with Argonaute1 (AGO1) in vitro and in vivo, and this interaction occurs primarily on one surface of the PAZ-containing module and part of the PIWI-box of AGO1. Consistent with this interaction, 2b specifically inhibits AGO1 cleavage activity in RISC reconstitution assays. In addition, AGO1 recruits virus-derived small interfering RNAs (siRNAs) in vivo, suggesting that AGO1 is a major factor in defense against CMV infection. We conclude that 2b blocks AGO1 cleavage activity to inhibit miRNA pathways, attenuate RNA silencing, and counter host defense. These findings provide insight on the molecular arms race between host antiviral RNA silencing and virus counterdefense.

22 October 2006 in Nature Biotechnology
Verified
Journal Article
Closed access
PDF file
QNQi-Wen Niu
Qi-Wen Niu
Shih-Shun LinShih-Shun Lin
Shih-Shun Lin
JRJosé Luis Reyes
José Luis Reyes
KCKuan-Chun Chen
Kuan-Chun Chen
HWHui-Wen Wu
Hui-Wen Wu
NCNam-Hai Chua
Nam-Hai Chua

17 August 2022 in The Plant Cell
Verified
Journal Article
Open access
PDF file
JBJohn L Bowman
John L Bowman
MAMario Arteaga-Vazquez
Mario Arteaga-Vazquez
FBFrédéric BERGER
Frédéric BERGER
LBLiam N Briginshaw
Liam N Briginshaw
PCPhilip Carella
Philip Carella
SZSabine Zachgo
Sabine Zachgo
The liverwort Marchantia polymorpha has been utilized as a model for biological studies since the 18th century. In the past few decades, there has been a Renaissance in its utilization in genomic and genetic approaches to investigating physiological, developmental, and evolutionary aspects of land plant biology. The reasons for its adoption are similar to those of other genetic models, e.g. simple cultivation, ready access via its worldwide distribution, ease of crossing, facile genetics, and more recently, efficient transformation, genome editing, and genomic resources. The haploid gametophyte dominant life cycle of M. polymorpha is conducive to forward genetic approaches. The lack of ancient whole-genome duplications within liverworts facilitates reverse genetic approaches, and possibly related to this genomic stability, liverworts possess sex chromosomes that evolved in the ancestral liverwort. As a representative of one of the three bryophyte lineages, its phylogenetic position allows comparative approaches to provide insights into ancestral land plants. Given the karyotype and genome stability within liverworts, the resources developed for M. polymorpha have facilitated the development of related species as models for biological processes lacking in M. polymorpha.

11 November 2008 in The Plant Journal
Verified
Journal Article
Open access
PDF file
Shih-Shun LinShih-Shun Lin
Shih-Shun Lin
RMRaquel Martin
Raquel Martin
SMSebastien Mongrand
Sebastien Mongrand
SVSteven Vandenabeele
Steven Vandenabeele
KCKuan‐Chun Chen
Kuan‐Chun Chen
NCNam‐Hai Chua
Nam‐Hai Chua
Summary: Ubiquitination plays important roles in plant development, including programmed cell death. Here, we characterize a novel membrane‐bound RING motif protein, encoded by RING1, that is expressed at a low level in all Arabidopsis tissues but can be upregulated by fumonisin B1 (FB1) treatment and pathogen infection. RING1 displays E3 ubiquitin ligase activity in vitro, which is dependent on the integrity of the RING motif. GFP fusion protein localization and cell fractionation experiments show that this E3 ligase is associated with the lipid rafts of plasma membranes. Knock‐down of RING1 transcripts using artificial microRNA (amiR‐R1159) leads to FB1 hyposensitivity, but overexpression of RING1 confers hypersensitivity. Additionally, expression of the pathogenesis‐related 1 (PR‐1) gene is lower and delayed in amiR‐R1159 plants compared with wild‐type and RING1‐overexpressing plants. The FB1 hyposensitivity of amiR‐R1159 plants can be rescued by expression of cleavage‐resistant RING1mut transcripts. Our results suggest that RING1 acts as a signal from the plasma membrane lipid rafts to trigger the FB1‐induced plant programmed cell death pathway.

7 December 2015 in Plant and Cell Physiology
Verified
Journal Article
Open access
JBJohn L. Bowman
John L. Bowman
TATakashi Araki
Takashi Araki
MAMario A. Arteaga-Vazquez
Mario A. Arteaga-Vazquez
FBFrédéric BERGER
Frédéric BERGER
LDLiam Dolan
Liam Dolan
TKTakayuki Kohchi
Takayuki Kohchi
While Marchantia polymorpha has been utilized as a model system to investigate fundamental biological questions for over almost two centuries, there is renewed interest in M. polymorpha as a model genetic organism in the genomics era. Here we outline community guidelines for M. polymorpha gene and transgene nomenclature, and we anticipate that these guidelines will promote consistency and reduce both redundancy and confusion in the scientific literature.