James Davis

Prof. James Davis


Research Focus & Metrics

Academic Career Length

35Years (1992-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 July 2013 in Chemical Communications
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Journal Article
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CCCody G. Cassity
Cody G. Cassity
AMArsalan Mirjafari
Arsalan Mirjafari
NMNiloufar Mobarrez
Niloufar Mobarrez
KSKatie J. Strickland
Katie J. Strickland
RORichard A. O'Brien
Richard A. O'Brien
JDJames Davis
James Davis
In a head-to-head study, ILs based upon tetraarylphosphonium cations exhibit superior long-term thermal stability compared to familiar salts based upon imidazolium, quaternary ammonium, or tetraalkylphosphonium cations.

29 August 2013 in Environmental Chemistry Letters
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JMJonathan L. McDonald
Jonathan L. McDonald
RSRichard E. Sykora
Richard E. Sykora
PHPaul Hixon
Paul Hixon
AMArsalan Mirjafari
Arsalan Mirjafari
JDJames Davis
James Davis

8 January 2021 in Nature Communications
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Journal Article
Open access
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ASAlexander A. Shcherbakov
Alexander A. Shcherbakov
GHGrant Hisao
Grant Hisao
VMVenkata S. Mandala
Venkata S. Mandala
NTNathan E. Thomas
Nathan E. Thomas
MSMohammad Soltani
Mohammad Soltani
MHMei Hong
Mei Hong
The dimeric transporter, EmrE, effluxes polyaromatic cationic drugs in a proton-coupled manner to confer multidrug resistance in bacteria. Although the protein is known to adopt an antiparallel asymmetric topology, its high-resolution drug-bound structure is so far unknown, limiting our understanding of the molecular basis of promiscuous transport. Here we report an experimental structure of drug-bound EmrE in phospholipid bilayers, determined using 19F and 1H solid-state NMR and a fluorinated substrate, tetra(4-fluorophenyl) phosphonium (F4-TPP+). The drug-binding site, constrained by 214 protein-substrate distances, is dominated by aromatic residues such as W63 and Y60, but is sufficiently spacious for the tetrahedral drug to reorient at physiological temperature. F4-TPP+ lies closer to the proton-binding residue E14 in subunit A than in subunit B, explaining the asymmetric protonation of the protein. The structure gives insight into the molecular mechanism of multidrug recognition by EmrE and establishes the basis for future design of substrate inhibitors to combat antibiotic resistance.

26 March 2018 in Chemical Communications
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BRBrooks Rabideau
Brooks Rabideau
KWKevin N. West
Kevin N. West
JDJames Davis
James Davis
Most ionic liquids are not, as frequently asserted, materials of unusual thermal stability. However, it is possible to create ionic liquids which are, through a combination of iterative ion design/synthesis, and thermochemical measurements, coupled with quantum and molecular dynamics calculations.

7 May 2020 in Physical Chemistry Chemical Physics
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BRBrooks Rabideau
Brooks Rabideau
MSMohammad Soltani
Mohammad Soltani
RPRome A. Parker
Rome A. Parker
BSBenjamin Siu
Benjamin Siu
ESE. Alan Salter
E. Alan Salter
JDJames Davis
James Davis
In previous work with thermally robust salts [Cassity et al., Phys. Chem. Chem. Phys., 2017, 19, 31560] it was noted that an increase in the dipole moment of the cation generally led to a decrease in the melting point. Molecular dynamics simulations of the liquid state revealed that an increased dipole moment reduces cation–cation repulsions through dipole–dipole alignment. This was believed to reduce the liquid phase enthalpy, which would tend to lower the melting point of the IL. In this work we further test this principle by replacing hydrogen atoms with fluorine atoms at selected positions within the cation. This allows us to alter the electrostatics of the cation without substantially affecting the sterics. Furthermore, the strength of the dipole moment can be controlled by choosing different positions within the cation for replacement. We studied variants of four different parent cations paired with bistriflimide and determined their melting points, and enthalpies and entropies of fusion through DSC experiments. The decreases in the melting point were determined to be enthalpically driven. We found that the dipole moment of the cation, as determined by quantum chemical calculations, is inversely correlated with the melting point of the given compound. Molecular dynamics simulations of the crystalline and solid states of two isomers showed differences in their enthalpies of fusion that closely matched those seen experimentally. Moreover, this reduction in the enthalpy of fusion was determined to be caused by an increase in the enthalpy of the crystalline state. We provide evidence that dipole–dipole interactions between cations leads to the formation of cationic domains in the crystalline state. These cationic associations partially block favourable cation–anion interactions, which are recovered upon melting. If, however, the dipole–dipole interactions between cations is too strong they have a tendency to form glasses. This study provides a design rule for lowering the melting point of structurally similar ILs by altering their dipole moment.

30 August 2022 in ACS Sustainable Chemistry & Engineering
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Journal Article
Closed access
ERElizabeth A. Recker
Elizabeth A. Recker
MGMatthew Green
Matthew Green
MSMohammad Soltani
Mohammad Soltani
DPDaniel H. Paull
Daniel H. Paull
GMGregory J. McManus
Gregory J. McManus
AMArsalan Mirjafari
Arsalan Mirjafari