Leptospirosis is a re-emerging form of zoonosis that is caused by the spirochete pathogen Leptospira. Extracellular proteins play critical roles in the pathogenicity and survival of this pathogen in the host and environment. Extraction and analysis of extracellular proteins is a difficult task due to the abundance of enrichments like serum and bovine serum albumin in the culture medium, as is distinguishing them from the cellular proteins that may reach the analyte during extraction. In this study, extracellular proteins were separated as secretory proteins from the culture supernatant and surface proteins were separated during the washing of the cell pellet. The proteins identified were sorted based on the proportion of the cellular fractions and the extracellular fractions. The results showed the identification of 56 extracellular proteins, out of which 19 were exclusively extracellular. For those proteins, the difference in quantity with respect to their presence within the cell was found to be up to 1770-fold. Further, bioinformatics analysis elucidated characteristics and functions of the identified proteins. Orthologs of extracellular proteins in various Leptospira species were found to be closely related among different pathogenic forms. In addition to the identification of extracellular proteins, this study put forward a method for the extraction and identification of extracellular proteins.
8 August 2025 in Journal of Visualized Experiments
Prokaryotes lack precise subcellular organelles but exhibit distinct regions such as cytoplasm, inner membrane, periplasm, and outer membrane, where most biochemical and physiological functions are organized. Thus, understanding the functional characteristics of proteins necessitates elucidating their subcellular localization. However, extracting subcellular proteins from gram-negative bacteria poses challenges due to their complex phospholipid bilayer. Although Triton X-114 has shown promise in outer membrane protein (OMP) extraction, a concise protocol remains elusive. This protocol demonstrates a step-by-step workflow for extracting subcellular proteins using the spirochete Leptospira as a model. This technique, featuring subcellular fractionation and phase separation, yields distinct fractions for cytoplasmic, outer, and inner membrane proteins. The detergent Triton X-114 is well-suited for phase separation due to its optimal cloud point temperature (~22 °C) and low critical micelle concentration (CMC), enabling efficient extraction and purification of native proteins with minimal denaturation. Notably, the analysis reveals the efficiency in discriminating proteins from the inner and outer membranes distinct from the cytoplasm.
Proteinases of pathogenic bacteria contribute to invasion and pathogenesis by actively degrading the host's extracellular matrix (ECM) components and cellular barriers, modifying the host immune response and degrading the host defense system. This makes the proteinases one of the most virulent molecules and their identification and characterization are essential for preventing and controlling disease. Many bacteria also possess outer membrane-bound proteinases. Isolation and characterization of outer membrane proteins in their active forms present significant challenges due to their localization within the outer membrane. In this study, we demonstrate a single-step method for extracting both cytoplasmic and outer membrane-associated gelatinases from Leptospira and demonstrate their enzymatic activity using zymography. In this method, we use sodium deoxycholate to disrupt the cell membrane and release the bound proteins and 6-aminocaproic acid to solubilize the released membrane protein in its native form. Further, we show a zymographic analysis of the leptospiral gelatinases. This approach provides a versatile framework for isolating, purifying, and characterizing metalloproteases, collagenases, and gelatinases from various bacterial pathogens.
1 August 2025 in Journal of Visualized Experiments
Proteinases of pathogenic bacteria contribute to invasion and pathogenesis by actively degrading the host's extracellular matrix (ECM) components and cellular barriers, modifying the host immune response and degrading the host defense system. This makes the proteinases one of the most virulent molecules and their identification and characterization are essential for preventing and controlling disease. Many bacteria also possess outer membrane-bound proteinases. Isolation and characterization of outer membrane proteins in their active forms present significant challenges due to their localization within the outer membrane. In this study, we demonstrate a single-step method for extracting both cytoplasmic and outer membrane-associated gelatinases from Leptospira and demonstrate their enzymatic activity using zymography. In this method, we use sodium deoxycholate to disrupt the cell membrane and release the bound proteins and 6-aminocaproic acid to solubilize the released membrane protein in its native form. Further, we show a zymographic analysis of the leptospiral gelatinases. This approach provides a versatile framework for isolating, purifying, and characterizing metalloproteases, collagenases, and gelatinases from various bacterial pathogens.