To identify the effect of nitrogen (N) nutrition on photosynthetic efficiency and mesophyll conductance of rice seedlings (Oryza sativa L., cv. ‘Shanyou 63’ hybrid indica China), hydroponic experiments with different concentrations of N were conducted in a greenhouse. Although leaf N concentration on a dry mass basis increased with increasing supply of N, no significant differences in seedling biomass were observed. A higher light-saturated CO₂ assimilation rate (A) with a high concentration of supplied N was associated with a higher carboxylation efficiency (CE), but not a higher apparent quantum yield (α). Based on classic photosynthetic models, both the Rubisco content and the ribulose bisphosphate (RuBP) regeneration rate were sufficient for light-saturated photosynthesis in rice seedlings; the estimated chloroplastic CO₂ concentration (C_c) and mesophyll conductance (g_m) demonstrated that a low C_c was the ultimate limiting factor to photosynthetic efficiency with a higher N supply. Due to a greater chloroplast size (i.e. a shorter distance to the plasma membrane) with a higher supply of N, the CO₂ transport resistance in the liquid phase (g_liq) in high-N leaves was lower than that in low-N leaves, which resulted in higher g_m and C_c in high-N leaves. Although CE_A/Ci was higher with a high supply of N, there were no differences in CE_A/Cc between plants grown with different concentrations of N, indicating that the carboxylation capacity of Rubisco between plants grown at different N concentrations was constant. The enhanced photosynthetic rate with supply of a high N concentration was attributed to a higher CO₂ concentration in the chloroplasts, related to a higher mesophyll conductance due to an increased chloroplast size.

Previous studies demonstrated that ammonium nutrition results in higher water uptake rate than does nitrate nutrition under water stress, and thus enhances the tolerance of rice plants to water stress. However, the process by which water uptake is related to nitrogen form under water stress remains unknown. A hydroponic experiment with simulated water stress induced by polyethylene glycol (PEG6000) was conducted in a greenhouse to study the relationship between root aerenchyma formation and water uptake rate, such as xylem sap flow rate and hydraulic conductance, in two different rice cultivars (cv. ‘Shanyou 63’ hybrid indica and cv. ‘Yangdao 6’ indica, China). The results showed that root aerenchyma tissue increased in water-stressed plants of both cultivars fed by nitrate. No significant difference was found in root hydraulic conductivity and/or xylem sap flow rate between the two rice cultivars fed by ammonium regardless of water status, whereas these parameters decreased significantly in water-stressed plants fed by nitrate. It was concluded that aerenchyma that formed in the root cortex impeded the radial transport of water in the root cylinder and decreased water uptake in water-stressed rice plants fed by nitrate. Water transport occurred mainly through Hg-sensitive water channels in rice roots supplied with ammonium.

High nitrogen (N) supply frequently results in a decreased photosynthetic N-use efficiency (PNUE), which indicates a less efficient use of accumulated Ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco). Chloroplasts are the location of Rubisco and the endpoint of CO₂ diffusion, and they play a vital important role in photosynthesis. However, the effects of chloroplast development on photosynthesis are poorly explored. In the present study, rice seedlings (Oryza sativa L., cv. ‘Shanyou 63’, and ‘Yangdao 6’) were grown hydroponically with three different N levels, morphological characteristics, photosynthetic variables and chloroplast size were measured. In Shanyou 63, a negative relationship between chloroplast size and PNUE was observed across three different N levels. Here, plants with larger chloroplasts had a decreased ratio of mesophyll conductance (g_m) to Rubisco content (g_m/Rubisco) and a lower Rubisco specific activity. In Yangdao 6, there was no change in chloroplast size and no decline in PNUE or g_m/Rubisco ratio under high N supply. It is suggested that large chloroplasts under high N supply is correlated with the decreased Rubisco specific activity and PNUE.

The rapid response of stomatal conductance (g_s) to fluctuating irradiance is of great importance to maximize carbon assimilation while minimizing water loss. Smaller stomata have been proven to have a faster response rate than larger ones, but most of these studies have been conducted with forest trees. In the present study, the effects of stomatal anatomy on the kinetics of g_s and photosynthesis were investigated in 16 Oryza genotypes. Light-induced stomatal opening includes an initial time lag (λ) followed by an exponential increase. Smaller stomata had a larger maximum stomatal conductance increase rate (Sl_max) during the exponential increase phase, but showed a longer time lag and a lower initial stomatal conductance (g_s,initial) at low light. Stomatal size was, surprisingly, negatively correlated with the time required to reach 50% of maximum g_s and photosynthesis (T_50%gs and T_50%A), which was shown to be positively correlated with λ and negatively correlated with g_s,initial. With a lower g_s,initial and a larger λ, small stomata showed a faster decrease of intercellular CO₂ concentration (C_i) during the induction process, which may have led to a slower apparent Rubisco activation rate. Therefore, smaller stomata do not always benefit photosynthesis as reported before; the influence of stomatal size on dynamic photosynthesis is also correlated with λ and g_s,initial.