Stephen Cose

Dr. Stephen Cose

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Research Focus & Metrics

Academic Career Length

34Years (1993-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 May 2006 in European Journal of Immunology
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Journal Article
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SCStephen Cose
Stephen Cose
CBClair Brammer
Clair Brammer
KKKamal M. Khanna
Kamal M. Khanna
DMDavid Masopust
David Masopust
LLLeo Lefrançois
Leo Lefrançois
Only activated and effector memory T cells are thought to access non‐lymphoid tissues. In contrast, naive T cells are thought to circulate only between the blood, lymph and secondary lymphoid organs. We examined the phenotype of endogenous T cells in various non‐lymphoid organs and showed that a subset of cells exhibited an apparently naive phenotype and were functionally inactive. FTY720 treatment selectively depleted this population from the non‐lymphoid tissues. In addition, RAG‐deficient TCR transgenic CD4 and CD8 T cells were present in non‐lymphoid tissues in bone marrow chimeric mice and in situ imaging analysis revealed their location in the parenchymal tissues. Moreover, migration of TCR transgenic T cells to non‐lymphoid tissues after adoptive transfer was pertussis‐toxin resistant. Overall, the results suggest that naive T cells may circulate through non‐lymphoid tissues as part of their normal migratory pathway.

1 December 1993 in European Journal of Immunology
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Journal Article
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JKJanice M. Kelly
Janice M. Kelly
SSSandra J. Sterry
Sandra J. Sterry
SCStephen Cose
Stephen Cose
STStephen Turner
Stephen Turner
JFJohn Fecondo
John Fecondo
FCFrancis R. Carbone
Francis R. Carbone

1 June 1995 in European Journal of Immunology
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Journal Article
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WHWilliam Ross Heath
William Ross Heath
FCFrancis R. Carbone
Francis R. Carbone
PBPatrick Bertolino
Patrick Bertolino
JKJannice Kelly
Jannice Kelly
SCStephen Cose
Stephen Cose
JMJacques F. A. P. Miller
Jacques F. A. P. Miller

9 December 2014 in The Journal of Infectious Diseases
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Journal Article
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DMDavid Meya
David Meya
SOSamuel Okurut
Samuel Okurut
GZGodfrey Zziwa
Godfrey Zziwa
MRMelissa A. Rolfes
Melissa A. Rolfes
MKMelander Kelsey
Melander Kelsey
EJEdward N. Janoff
Edward N. Janoff
Background. Human immunodeficiency virus (HIV)-associated cryptococcal meningitis (CM) is characterized by high fungal burden and limited leukocyte trafficking to cerebrospinal fluid (CSF). The immunopathogenesis of CM immune reconstitution inflammatory syndrome (IRIS) after initiation of antiretroviral therapy at the site of infection is poorly understood. Methods. We characterized the lineage and activation status of mononuclear cells in blood and CSF of HIV-infected patients with noncryptococcal meningitis (NCM) (n = 10), those with CM at day 0 (n = 40) or day 14 (n = 21) of antifungal therapy, and those with CM-IRIS (n = 10). Results. At diagnosis, highly activated CD8+ T cells predominated in CSF in both CM and NCM. CM-IRIS was associated with an increasing frequency of CSF CD4+ T cells (increased from 2.2% to 23%; P = .06), a shift in monocyte phenotype from classic to an intermediate/proinflammatory, and increased programmed death ligand 1 expression on natural killer cells (increased from 11.9% to 61.6%, P = .03). CSF cellular responses were distinct from responses in peripheral blood. Conclusions. After CM, T cells in CSF tend to evolve with the development of IRIS, with increasing proportions of activated CD4+ T cells, migration of intermediate monocytes to the CSF, and declining fungal burden. These changes provide insight into IRIS pathogenesis and could be exploited to more effectively treat CM and prevent CM-IRIS.

5 July 2022 in Parasite Immunology
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Journal Article
Open access
1N1 Natukunda
1 Natukunda
LZLudoviko Zirimenya
Ludoviko Zirimenya
JNJacent Nassuuna
Jacent Nassuuna
GNGyaviira Nkurunungi
Gyaviira Nkurunungi
SCStephen Cose
Stephen Cose
EWEmily L. Webb
Emily L. Webb
Vaccination has potential to eliminate infectious diseases. However, parasitic infections such as helminths may hinder vaccines from providing optimal protection. We reviewed existing literature on the effects of helminth infections and their treatment on vaccine responses in humans and animals. We searched literature until 31 January 2022 in Medline, EMBASE, Global health, Scopus, and Web of science; search terms included WHO licensed vaccines and human helminth types. Standardized mean differences (SMD) in vaccine responses between helminth infected and uninfected or anthelminthic treated and untreated individuals were obtained from each study with suitable data for meta‐analysis, and combined using a random effects model. Analysis was stratified by whether helminth exposure was direct or prenatal and by vaccine type. This study is registered with PROSPERO (CRD42019123074). Of the 4402 articles identified, 37 were included in the review of human studies and 24 for animal experiments. For human studies, regardless of vaccine type, overall SMD for helminth uninfected/treated, compared to infected/untreated, was 0.56 (95% CI 0.04–1.07 and I2 = 93.5%) for direct helminth exposure and 0.01 (95% CI −0.04 to 0.07 and I2 = 85.9%) for prenatal helminth exposure. Effects of anthelminthic treatment were inconsistent, with no overall benefit shown. Results differed by vaccine type, with responses to live vaccines most affected by helminth exposure. For animal studies, the most affected vaccine was BCG. This result indicates that helminth‐associated impairment of vaccine responses is more severe for direct, than for prenatal, helminth exposure. Further research is needed to ascertain whether deworming of individuals before vaccination may help improve responses.

1 July 2013 in BMC Public Health
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Journal Article
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DKDennison Kizito
Dennison Kizito
RTRobert Tweyongyere
Robert Tweyongyere
ANAlice Namatovu
Alice Namatovu
EWEmily L Webb
Emily L Webb
LMLawrence Muhangi
Lawrence Muhangi
AEAlison M Elliott
Alison M Elliott
Vaccine failure is an important concern in the tropics with many contributing elements. Among them, it has been suggested that exposure to natural infections might contribute to vaccine failure and recurrent disease outbreaks. We tested this hypothesis by examining the influence of co-infections on maternal and infant measles-specific IgG levels. We conducted an observational analysis using samples and data that had been collected during a larger randomised controlled trial, the Entebbe Mother and Baby Study (ISRCTN32849447). For the present study, 711 pregnant women and their offspring were considered. Helminth infections including hookworm, Schistosoma mansoni and Mansonella perstans, along with HIV, malaria, and other potential confounding factors were determined in mothers during pregnancy and in their infants at age one year. Infants received their measles immunisation at age nine months. Levels of total IgG against measles were measured in mothers during pregnancy and at delivery, as well as in cord blood and from infants at age one year. Among the 711 pregnant women studied, 66% had at least one helminth infection at enrolment, 41% had hookworm, 20% M. perstans and 19% S. mansoni. Asymptomatic malaria and HIV prevalence was 8% and 10% respectively. At enrolment, 96% of the women had measles-specific IgG levels considered protective (median 4274 mIU/ml (IQR 1784, 7767)). IgG levels in cord blood were positively correlated to maternal measles-specific IgG levels at delivery (r = 0.81, p < 0.0001). Among the infants at one year of age, median measles-specific IgG levels were markedly lower than in maternal and cord blood (median 370 mIU/ml (IQR 198, 656) p < 0.0001). In addition, only 75% of the infants had measles-specific IgG levels considered to be protective. In a multivariate regression analysis, factors associated with reduced measles-specific antibody levels in infancy were maternal malaria infection, infant malaria parasitaemia, infant HIV and infant wasting. There was no association with maternal helminth infection. Malaria and HIV infection in mothers during pregnancy, and in their infants, along with infant malnutrition, may result in reduction of the antibody response to measles immunisation in infancy. This re-emphasises the importance of malaria and HIV control, and support for infant nutrition, as these interventions may have benefits for vaccine efficacy in tropical settings.