Alexander Brenner

Mr. Alexander Brenner


Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 January 2024 in npj Parkinson's Disease
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Journal Article
Open access
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Julian VargheseJulian Varghese
Julian Varghese
ABAlexander Brenner
Alexander Brenner
MFMichael Fujarski
Michael Fujarski
CACatharina Marie van Alen
Catharina Marie van Alen
LPLucas Plagwitz
Lucas Plagwitz
TWTobias Warnecke
Tobias Warnecke
The utilisation of smart devices, such as smartwatches and smartphones, in the field of movement disorders research has gained significant attention. However, the absence of a comprehensive dataset with movement data and clinical annotations, encompassing a wide range of movement disorders including Parkinson’s disease (PD) and its differential diagnoses (DD), presents a significant gap. The availability of such a dataset is crucial for the development of reliable machine learning (ML) models on smart devices, enabling the detection of diseases and monitoring of treatment efficacy in a home-based setting. We conducted a three-year cross-sectional study at a large tertiary care hospital. A multi-modal smartphone app integrated electronic questionnaires and smartwatch measures during an interactive assessment designed by neurologists to provoke subtle changes in movement pathologies. We captured over 5000 clinical assessment steps from 504 participants, including PD, DD, and healthy controls (HC). After age-matching, an integrative ML approach combining classical signal processing and advanced deep learning techniques was implemented and cross-validated. The models achieved an average balanced accuracy of 91.16% in the classification PD vs. HC, while PD vs. DD scored 72.42%. The numbers suggest promising performance while distinguishing similar disorders remains challenging. The extensive annotations, including details on demographics, medical history, symptoms, and movement steps, provide a comprehensive database to ML techniques and encourage further investigations into phenotypical biomarkers related to movement disorders.

31 July 2021 in Sensors
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Journal Article
Open access
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EKEkaterina Kutafina
Ekaterina Kutafina
AHAnne Heiligers
Anne Heiligers
RPRadomir Popovic
Radomir Popovic
ABAlexander Brenner
Alexander Brenner
BHBernd Hankammer
Bernd Hankammer
JZJana Zweerings
Jana Zweerings
The aim of the present investigation was to assess if a mobile electroencephalography (EEG) setup can be used to track mental workload, which is an important aspect of learning performance and motivation and may thus represent a valuable source of information in the evaluation of cognitive training approaches. Twenty five healthy subjects performed a three-level N-back test using a fully mobile setup including tablet-based presentation of the task and EEG data collection with a self-mounted mobile EEG device at two assessment time points. A two-fold analysis approach was chosen including a standard analysis of variance and an artificial neural network to distinguish the levels of cognitive load. Our findings indicate that the setup is feasible for detecting changes in cognitive load, as reflected by alterations across lobes in different frequency bands. In particular, we observed a decrease of occipital alpha and an increase in frontal, parietal and occipital theta with increasing cognitive load. The most distinct levels of cognitive load could be discriminated by the integrated machine learning models with an accuracy of 86%.

25 May 2022
Verified
Book Chapter
Open access
PDF file
LPLucas Plagwitz
Lucas Plagwitz
ABAlexander Brenner
Alexander Brenner
MFMichael Fujarski
Michael Fujarski
Julian VargheseJulian Varghese
Julian Varghese
Machine learning algorithms become increasingly prevalent in the field of medicine, as they offer the ability to recognize patterns in complex medical data. Especially in this sensitive area, the active usage of a mostly black box is a controversial topic. We aim to highlight how an aggregated and systematic feature analysis of such models can be beneficial in the medical context. For this reason, we introduce a grouped version of the permutation importance analysis for evaluating the influence of entire feature subsets in a machine learning model. In this way, expert-defined subgroups can be evaluated in the decision-making process. Based on these results, new hypotheses can be formulated and examined.

30 September 2024 in Computer Methods and Programs in Biomedicine
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Journal Article
Open access
ABAlexander Brenner
Alexander Brenner
FKFelix Knispel
Felix Knispel
FFFlorian P. Fischer
Florian P. Fischer
PRPeter Rossmanith
Peter Rossmanith
YWYvonne Weber
Yvonne Weber
EKEkaterina Kutafina
Ekaterina Kutafina
Despite recent performance advancements, deep learning models are not yet adopted in clinical practice on a wide scale. The intrinsic intransparency of such systems is commonly cited as one major reason for this reluctance. This has motivated methods that aim to provide explanations of model functioning. Known limitations of feature-based explanations have led to an increased interest in concept-based interpretability. Testing with Concept Activation Vectors (TCAV) employs human-understandable, abstract concepts to explain model behavior. The method has previously been applied to the medical domain in the context of electronic health records, retinal fundus images and magnetic resonance imaging. We explore the usage of TCAV for building interpretable models on physiological time series, using an example of abnormality detection in electroencephalography (EEG). For this purpose, we adopt the XceptionTime model, which is suitable for multi-channel physiological data of variable sizes. The model provides state-of-the-art performance on raw EEG data and is publically available. We propose and test several ideas regarding concept definition through metadata mining, using additional labeled EEG data and extracting interpretable signal characteristics in the form of frequencies. By including our own hospital data with analog labeling, we further evaluate the robustness of our approach. The tested concepts show a TCAV score distribution that is in line with the clinical expectations, i.e. concepts known to have strong links with EEG pathologies (such as epileptiform discharges) received higher scores than the neutral concepts (e.g. sex). The scores were consistent across the applied concept generation strategies. TCAV has the potential to improve interpretability of deep learning applied to multi-channel signals as well as to detect possible biases in the data. Still, further work on developing the strategies for concept definition and validation on clinical physiological time series is needed to better understand how to extract clinically relevant information from the concept sensitivity scores.

18 May 2023
Verified
Book Chapter
Open access
PDF file
ABAlexander Brenner
Alexander Brenner
CACatharina Marie Van Alen
Catharina Marie Van Alen
LPLucas Plagwitz
Lucas Plagwitz
JVJulian Varghese
Julian Varghese
A growing number of studies have been researching biomarkers of Parkinson’s disease (PD) using mobile technology. Many have shown high accuracy in PD classification using machine learning (ML) and voice records from the mPower study, a large database of PD patients and healthy controls. Since the dataset has unbalanced class, gender and age distribution, it is important to consider appropriate sampling when assessing classification scores. We analyse biases, such as identity confounding and implicit learning of non-disease-specific characteristics and present a sampling strategy to highlight and prevent these problems.

22 August 2024
Verified
Book Chapter
Open access
PDF file
ABAlexander Brenner
Alexander Brenner
YWYannik Warnecke
Yannik Warnecke
MFMichael Fujarski
Michael Fujarski
JVJulian Varghese
Julian Varghese
With increasing digitalization in healthcare, there is growing potential for the use of Mixed Reality (MR) in medicine. In response to this, we developed a course to provide students with hands-on experience in MR and familiarize them with the technology. Utilizing the HoloLens 2, we designed an application enabling multiple users to interact with virtual objects overlaid on the real world and shared across devices. We used 3D heart anatomy models to let students discuss cardiovascular diseases together. We conducted a preliminary evaluation of our prototype, involving ten participants. The first test indicated a positive reception of the course, with students expressing keen interest in MR. With this work we share our experience to contribute to the field of MR applications.