Syed Ali

Dr. Syed Ali


Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 March 2013 in Analytical Methods
Verified
Journal Article
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SASyed Ali
Syed Ali
FBFranck Bonnier
Franck Bonnier
HLH. Lambkin
H. Lambkin
KFK. Flynn
K. Flynn
VMV. McDonagh
V. McDonagh
Hugh ByrneHugh Byrne
Hugh Byrne
Raman and infrared absorption spectroscopies are compared for the analysis of human hand skin tissue sections. The tissue sections have been formalin fixed and paraffin processed, and subsequently dewaxed. Fourier Transform Infrared (FTIR) spectra are preprocessed using the resonant Mie-extended multiplicative scattering algorithm to remove spectral artefacts. FTIR images of resolution 4 cm−1, analysed using K-means cluster analysis, reveal the double layer structure of the dermis and epidermis, but no further layer differentiation is achieved using the higher spatial resolution of the Attenuated Total Reflection imaging or improved spectral resolution of 2 cm−1. At comparable spectral and spatial resolutions and measurement on the same samples, Raman scattering produces spectra of significantly higher spectral detail and can differentiate the stratum corneum from the underlying epithelial layer, and, in the absence of melanin in an artificial skin model, can further differentiate the basal layer from the overlying epithelium. The differences in the performance of the techniques are therefore not instrumentational and are discussed in terms of the technological and fundamental differences between the two complementary techniques.

2 November 2012 in Journal of Biomedical Optics
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Journal Article
Closed access
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SASyed Ali
Syed Ali
FBFranck Bonnier
Franck Bonnier
ATAli TFAYLI
Ali TFAYLI
HLHelen A. Lambkin
Helen A. Lambkin
KFKathleen Flynn
Kathleen Flynn
Hugh ByrneHugh Byrne
Hugh Byrne
Raman spectroscopy coupled with K-means clustering analysis (KMCA) is employed to elucidate the biochemical structure of human skin tissue sections and the effects of tissue processing. Both hand and thigh sections of human cadavers were analyzed in their unprocessed and formalin-fixed, paraffin-processed (FFPP), and subsequently dewaxed forms. In unprocessed sections, KMCA reveals clear differentiation of the stratum corneum (SC), intermediate underlying epithelium, and dermal layers for sections from both anatomical sites. The SC is seen to be relatively rich in lipidic content; the spectrum of the subjacent layers is strongly influenced by the presence of melanin, while that of the dermis is dominated by the characteristics of collagen. For a given anatomical site, little difference in layer structure and biochemistry is observed between samples from different cadavers. However, the hand and thigh sections are consistently differentiated for all cadavers, largely based on lipidic profiles. In dewaxed FFPP samples, while the SC, intermediate, and dermal layers are clearly differentiated by KMCA of Raman maps of tissue sections, the lipidic contributions to the spectra are significantly reduced, with the result that respective skin layers from different anatomical sites become indistinguishable. While efficient at removing the fixing wax, the tissue processing also efficiently removes the structurally similar lipidic components of the skin layers. In studies of dermatological processes in which lipids play an important role, such as wound healing, dewaxed samples are therefore not appropriate. Removal of the lipids does however accentuate the spectral features of the cellular and protein components, which may be more appropriate for retrospective analysis of disease progression and biochemical analysis using tissue banks.

1 July 2012 in Vibrational Spectroscopy
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Journal Article
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FBFranck Bonnier
Franck Bonnier
SASyed Ali
Syed Ali
PKP. Knief
P. Knief
HLH. Lambkin
H. Lambkin
KFK. Flynn
K. Flynn
Hugh ByrneHugh Byrne
Hugh Byrne

26 February 2013 in The Analyst
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Journal Article
Closed access
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SASyed Ali
Syed Ali
FBFranck Bonnier
Franck Bonnier
KPK. Ptasinski
K. Ptasinski
HLH. Lambkin
H. Lambkin
KFK. Flynn
K. Flynn
Hugh ByrneHugh Byrne
Hugh Byrne
The effects of simulated solar irradiation of an artificial skin model have been examined using Raman spectroscopy and the results are compared with cytotoxicological and histological profiling. Samples exposed for times varying between 30 minutes and 240 minutes were incubated post exposure for a period of 96 hours. The cytotoxicological response as measured by the MTT [3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide] assay demonstrated a ∼50% loss of viability of the artificial tissue after 120 minutes exposure. Histological staining of tissue sections showed considerable loss of cellular content in the epidermal layer at this endpoint. Raman spectroscopic mapping of tissue sections, coupled with K-means cluster analysis (KMCA) clearly identified the dermal and stratum corneum layers and differentiated further substructures of the epidermis. Post irradiation, a significant loss of DNA features in the basal layer was apparent in the results of the KMCA. Principal Components Analysis (PCA) of layers identified by the KMCA post exposure compared with controls indicated a significant increase in the lipidic signatures of the stratum corneum. In the dermal layer, little photodamage was observed, but a similar increase in lipidic signatures in the basal layer was accompanied by a decrease in DNA and protein contributions. The spectral profiles of the photodamage to the basal layer as identified by PCA are consistent over the exposure periods of 30–240 minutes, but an examination of the evolution of features associated with specific biochemical components indicated DNA damage and loss of lipidic signatures at the early exposure times, whereas changes in protein signatures appeared to evolve over longer periods. In comparison to the cytotoxicological responses, the study demonstrates that Raman spectroscopy can identify biochemical changes as a result of solar exposure at time points significantly earlier than changes in tissue viability are observed.

1 December 2015 in Journal of Photochemistry and Photobiology B: Biology
Verified
Journal Article
Closed access
MTM.G. Tosato
M.G. Tosato
DOD.E. Orallo
D.E. Orallo
SASyed Ali
Syed Ali
MCMaria Sandra Churio
Maria Sandra Churio
AMA.A. Martin
A.A. Martin
LDL. Dicelio
L. Dicelio