Kiruphagaran Thangaraju

Dr. Kiruphagaran Thangaraju

University of Maryland, Baltimore, Baltimore, Maryland, USA
orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
Verified
Journal Article
Open access
PDF file
KTKiruphagaran Thangaraju
Kiruphagaran Thangaraju
SNSABARINATH NEERUKONDA
SABARINATH NEERUKONDA
UKUpendra Katneni
Upendra Katneni
PBPaul W Buehler
Paul W Buehler
Red blood cells (RBCs) release extracellular vesicles (EVs) including both endosome-derived exosomes and plasma-membrane-derived microvesicles (MVs). RBC-derived EVs (RBCEVs) are secreted during erythropoiesis, physiological cellular aging, disease conditions, and in response to environmental stressors. RBCEVs are enriched in various bioactive molecules that facilitate cell to cell communication and can act as markers of disease. RBCEVs contribute towards physiological adaptive responses to hypoxia as well as pathophysiological progression of diabetes and genetic non-malignant hematologic disease. Moreover, a considerable number of studies focus on the role of EVs from stored RBCs and have evaluated post transfusion consequences associated with their exposure. Interestingly, RBCEVs are important contributors toward coagulopathy in hematological disorders, thus representing a unique evolving area of study that can provide insights into molecular mechanisms that contribute toward dysregulated hemostasis associated with several disease conditions. Relevant work to this point provides a foundation on which to build further studies focused on unraveling the potential roles of RBCEVs in health and disease. In this review, we provide an analysis and summary of RBCEVs biogenesis, composition, and their biological function with a special emphasis on RBCEV pathophysiological contribution to coagulopathy. Further, we consider potential therapeutic applications of RBCEVs.

2 September 2021 in Cells
Verified
Journal Article
Open access
PDF file
Angelo D'AlessandroAngelo D'Alessandro
Angelo D'Alessandro
TTTiffany Thomas
Tiffany Thomas
IAImo J. Akpan
Imo J. Akpan
JRJulie A. Reisz
Julie A. Reisz
FCFrancesca Isabelle Cendali
Francesca Isabelle Cendali
RFRichard O. Francis
Richard O. Francis
The Corona Virus Disease 2019 (COVID-19) pandemic represents an ongoing worldwide challenge. The present large study sought to understand independent and overlapping metabolic features of samples from acutely ill patients (n = 831) that tested positive (n = 543) or negative (n = 288) for COVID-19. High-throughput metabolomics analyses were complemented with antigen and enzymatic activity assays on plasma from acutely ill patients collected while in the emergency department, at admission, or during hospitalization. Lipidomics analyses were also performed on COVID-19-positive or -negative subjects with the lowest and highest body mass index (n = 60/group). Significant changes in amino acid and fatty acid/acylcarnitine metabolism emerged as highly relevant markers of disease severity, progression, and prognosis as a function of biological and clinical variables in these patients. Further, machine learning models were trained by entering all metabolomics and clinical data from half of the COVID-19 patient cohort and then tested on the other half, yielding ~78% prediction accuracy. Finally, the extensive amount of information accumulated in this large, prospective, observational study provides a foundation for mechanistic follow-up studies and data sharing opportunities, which will advance our understanding of the characteristics of the plasma metabolism in COVID-19 and other acute critical illnesses.

15 April 2021 in Human Molecular Genetics
Verified
Journal Article
Open access
PDF file
STSolaleh Khoramian Tusi
Solaleh Khoramian Tusi
LNLien Nguyen
Lien Nguyen
KTKiruphagaran Thangaraju
Kiruphagaran Thangaraju
JLJian Li
Jian Li
JCJohn D Cleary
John D Cleary
LRLaura P W Ranum
Laura P W Ranum
Repeat-associated non-ATG (RAN) proteins have been reported in 11 microsatellite expansion disorders but the factors that allow RAN translation to occur and the effects of different repeat motifs and alternative AUG-like initiation codons are unclear. We studied the mechanisms of RAN translation across myotonic dystrophy type 2 (DM2) expansion transcripts with (CCUG) or without (CAGG) efficient alternative AUG-like codons. To better understand how DM2 LPAC and QAGR RAN proteins are expressed, we generated a series of CRISPR/Cas9-edited HEK293T cell lines. We show that LPAC and QAGR RAN protein levels are reduced in protein kinase R (PKR)−/− and PKR-like endoplasmic reticulum kinase (PERK)−/− cells, with more substantial reductions of CAGG-encoded QAGR in PKR−/− cells. Experiments using mutant eIF2α-S51A HEK293T cells show that p-eIF2α is required for QAGR production. In contrast, LPAC levels were only partially reduced in these cells, suggesting that both non-AUG and close-cognate initiation occur across CCUG RNAs. Overexpression of the alternative initiation factor eIF2A increases LPAC and QAGR protein levels but, notably, has a much larger effect on QAGR expressed from CAGG-expansion RNAs that lack efficient close-cognate codons. The effects of eIF2A on increasing LPAC are consistent with previous reports that eIF2A affects CUG-initiation translation. The observation that eIF2A also increases QAGR proteins is novel because CAGG expansion transcripts do not contain CUG or similarly efficient close-cognate AUG-like codons. For QAGR but not LPAC, the eIF2A-dependent increases are not seen when p-eIF2α is blocked. These data highlight the differential regulation of DM2 RAN proteins and eIF2A as a potential therapeutic target for DM2 and other RAN diseases.

7 August 2015 in Amino Acids
Verified
Journal Article
Closed access
PDF file
RKRobert Kiraly
Robert Kiraly
KTKiruphagaran Thangaraju
Kiruphagaran Thangaraju
ZNZsófia Nagy
Zsófia Nagy
RCRussell Collighan
Russell Collighan
ZNZoltán Nemes
Zoltán Nemes
LFLászló Fésüs
László Fésüs

1 March 2017 in PLOS ONE
Verified
Journal Article
Open access
PDF file
KTKiruphagaran Thangaraju
Kiruphagaran Thangaraju
RKRobert Kiraly
Robert Kiraly
MDMáté A. Demény
Máté A. Demény
JMJános András Mótyán
János András Mótyán
MFMónika Fuxreiter
Mónika Fuxreiter
LFLászló Fésüs
László Fésüs
Transglutaminases (TGMs) catalyze Ca2+-dependent transamidation of proteins with specified roles in blood clotting (F13a) and in cornification (TGM1, TGM3). The ubiquitous TGM2 has well described enzymatic and non-enzymatic functions but in-spite of numerous studies its physiological function in humans has not been defined. We compared data on non-synonymous single nucleotide variations (nsSNVs) and loss-of-function variants on TGM1-7 and F13a from the Exome aggregation consortium dataset, and used computational and biochemical analysis to reveal the roles of damaging nsSNVs of TGM2. TGM2 and F13a display rarer damaging nsSNV sites than other TGMs and sequence of TGM2, F13a and TGM1 are evolutionary constrained. TGM2 nsSNVs are predicted to destabilize protein structure, influence Ca2+ and GTP regulation, and non-enzymatic interactions, but none coincide with conserved functional sites. We have experimentally characterized six TGM2 allelic variants detected so far in homozygous form, out of which only one, p.Arg222Gln, has decreased activities. Published exome sequencing data from various populations have not uncovered individuals with homozygous loss-of-function variants for TGM2, TGM3 and TGM7. Thus it can be concluded that human transglutaminases differ in harboring damaging variants and TGM2 is under purifying selection suggesting that it may have so far not revealed physiological functions.

4 November 2021 in Haemophilia
Verified
Journal Article
Closed access
PDF file
KTKenichi A. Tanaka
Kenichi A. Tanaka
RHReney Henderson
Reney Henderson
KTKiruphagaran Thangaraju
Kiruphagaran Thangaraju
YMYoshihisa Morita
Yoshihisa Morita
MMMichael A. Mazzeffi
Michael A. Mazzeffi
PBPaul W Buehler
Paul W Buehler