Matías Fernández Patón

Mr. Matías Fernández Patón


Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 March 2023 in Cancers
Verified
Journal Article
Open access
PDF file
DVDiana Veiga-Canuto
Diana Veiga-Canuto
Leonor Cerdá AlberichLeonor Cerdá Alberich
Leonor Cerdá Alberich
AJAna Jimenez-Pastor
Ana Jimenez-Pastor
JCJose Miguel Carot
Jose Miguel Carot
AGArmando Gomis-Maya
Armando Gomis-Maya
Luis Martí-BonmatíLuis Martí-Bonmatí
Luis Martí-Bonmatí
Objectives. To externally validate and assess the accuracy of a previously trained fully automatic nnU-Net CNN algorithm to identify and segment primary neuroblastoma tumors in MR images in a large children cohort. Methods. An international multicenter, multivendor imaging repository of patients with neuroblastic tumors was used to validate the performance of a trained Machine Learning (ML) tool to identify and delineate primary neuroblastoma tumors. The dataset was heterogeneous and completely independent from the one used to train and tune the model, consisting of 300 children with neuroblastic tumors having 535 MR T2-weighted sequences (486 sequences at diagnosis and 49 after finalization of the first phase of chemotherapy). The automatic segmentation algorithm was based on a nnU-Net architecture developed within the PRIMAGE project. For comparison, the segmentation masks were manually edited by an expert radiologist, and the time for the manual editing was recorded. Different overlaps and spatial metrics were calculated to compare both masks. Results. The median Dice Similarity Coefficient (DSC) was high 0.997; 0.944–1.000 (median; Q1–Q3). In 18 MR sequences (6%), the net was not able neither to identify nor segment the tumor. No differences were found regarding the MR magnetic field, type of T2 sequence, or tumor location. No significant differences in the performance of the net were found in patients with an MR performed after chemotherapy. The time for visual inspection of the generated masks was 7.9 ± 7.5 (mean ± Standard Deviation (SD)) seconds. Those cases where manual editing was needed (136 masks) required 124 ± 120 s. Conclusions. The automatic CNN was able to locate and segment the primary tumor on the T2-weighted images in 94% of cases. There was an extremely high agreement between the automatic tool and the manually edited masks. This is the first study to validate an automatic segmentation model for neuroblastic tumor identification and segmentation with body MR images. The semi-automatic approach with minor manual editing of the deep learning segmentation increases the radiologist’s confidence in the solution with a minor workload for the radiologist.

2 December 2021 in Biomolecules
Verified
Journal Article
Open access
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DMDavid Martí-Aguado
David Martí-Aguado
MPMatías Fernández Patón
Matías Fernández Patón
CAClara Alfaro-Cervelló
Clara Alfaro-Cervelló
CMClaudia Mestre-Alagarda
Claudia Mestre-Alagarda
MBMónica Bauza
Mónica Bauza
Luis Martí-BonmatíLuis Martí-Bonmatí
Luis Martí-Bonmatí
Traditional histological evaluation for grading liver disease severity is based on subjective and semi-quantitative scores. We examined the relationship between digital pathology analysis and corresponding scoring systems for the assessment of hepatic necroinflammatory activity. A prospective, multicenter study including 156 patients with chronic liver disease (74% nonalcoholic fatty liver disease-NAFLD, 26% chronic hepatitis-CH etiologies) was performed. Inflammation was graded according to the Nonalcoholic Steatohepatitis (NASH) Clinical Research Network system and METAVIR score. Whole-slide digital image analysis based on quantitative (I-score: inflammation ratio) and morphometric (C-score: proportionate area of staining intensities clusters) measurements were independently performed. Our data show that I-scores and C-scores increase with inflammation grades (p < 0.001). High correlation was seen for CH (ρ = 0.85–0.88), but only moderate for NAFLD (ρ = 0.5–0.53). I-score (p = 0.008) and C-score (p = 0.002) were higher for CH than NAFLD. Our MATLAB algorithm performed better than QuPath software for the diagnosis of low-moderate inflammation (p < 0.05). C-score AUC for classifying NASH was 0.75 (95%CI, 0.65–0.84) and for moderate/severe CH was 0.99 (95%CI, 0.97–1.00). Digital pathology measurements increased with fibrosis stages (p < 0.001). In conclusion, quantitative and morphometric metrics of inflammatory burden obtained by digital pathology correlate well with pathologists’ scores, showing a higher accuracy for the evaluation of CH than NAFLD.

10 September 2021 in Journal of Digital Imaging
Verified
Journal Article
Closed access
PDF file
MPMatías Fernández Patón
Matías Fernández Patón
Leonor Cerdá AlberichLeonor Cerdá Alberich
Leonor Cerdá Alberich
CNCinta Sangüesa Nebot
Cinta Sangüesa Nebot
BHBlanca Martínez de Las Heras
Blanca Martínez de Las Heras
DVDiana Veiga-Canuto
Diana Veiga-Canuto
Luis Martí-BonmatíLuis Martí-Bonmatí
Luis Martí-Bonmatí


25 September 2023 in Pediatric Radiology
Verified
Journal Article
Closed access
PDF file
DVDiana Veiga-Canuto
Diana Veiga-Canuto
Leonor Cerdá AlberichLeonor Cerdá Alberich
Leonor Cerdá Alberich
MPMatías Fernández Patón
Matías Fernández Patón
APAna Jiménez Pastor
Ana Jiménez Pastor
JLJose Lozano-Montoya
Jose Lozano-Montoya
Luis Martí-BonmatíLuis Martí-Bonmatí
Luis Martí-Bonmatí

1 July 2024 in Radiology: Artificial Intelligence
Verified
Journal Article
Closed access
DVDiana Veiga-Canuto
Diana Veiga-Canuto
MPMatías Fernández Patón
Matías Fernández Patón
LALeonor Cerdà Alberich
Leonor Cerdà Alberich
AJAna Jimenez-Pastor
Ana Jimenez-Pastor
AMArmando Gomis Maya
Armando Gomis Maya
Luis Martí-BonmatíLuis Martí-Bonmatí
Luis Martí-Bonmatí
"Just Accepted" papers have undergone full peer review and have been accepted for publication in Radiology: Artificial Intelligence. This article will undergo copyediting, layout, and proof review before it is published in its final version. Please note that during production of the final copyedited article, errors may be discovered which could affect the content. Purpose To evaluate the reproducibility of radiomics features extracted from T2-weighted MRI in patients with neuroblastoma. Materials and Methods A retrospective study included 419 patients (mean (SD) age, 29 (34) years; 220 male, 199 female) with neuroblastic tumors, diagnosed between 2002-2023, within the scope of the PRIMAGE-project, involving 746 MRI T2/T2*-weighted sequences at diagnosis and/or after initial chemotherapy. Images underwent processing steps (denoising, inhomogeneity bias field correction, normalization, and resampling). Tumors were automatically segmented and 107 shape, first-order and second-order radiomic features were extracted, considered as the reference standard. Subsequently, the previous image processing settings were modified, and volumetric masks were applied. New radiomics features were extracted and compared with the reference standard. Reproducibility was assessed using the concordance correlation coefficient (CCC), intrasubject repeatability was measured using the coefficient of variation (CoV). Results When normalization was omitted, only 5% of the radiomics features demonstrated high reproducibility. Statistical analysis revealed significant changes in the normalization and resampling processes (P < .001). Inhomogeneities removal had the least impact on radiomics (83% of parameters remained stable). Shape features remained stable after mask modifications, with a CCC > 0.90. Mask modifications were the most favorable changes for achieving high CCC values, with stability of 70% of the radiomics features. Only 7% of second-order radiomics features showed an excellent CoV of < 0.10. Conclusion Modifications in the T2-weighted MRI preparation process in patients with neuroblastoma resulted in changes in radiomics features, with normalization identified as the most influential factor for reproducibility. Inhomogeneities removal had the least impact on radiomics features. ©RSNA, 2024.