Yi Wu

Yi Wu


Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 July 2012 in Nature Genetics
Verified
Journal Article
Open access
PDF file
QQQiang Qiu
Qiang Qiu
GZGuojie Zhang
Guojie Zhang
TMTao Ma
Tao Ma
WQWubin Qian
Wubin Qian
JWJunyi Wang
Junyi Wang
JLJianquan Liu
Jianquan Liu
Domestic yaks (Bos grunniens) provide meat and other necessities for Tibetans living at high altitude on the Qinghai-Tibetan Plateau and in adjacent regions. Comparison between yak and the closely related low-altitude cattle (Bos taurus) is informative in studying animal adaptation to high altitude. Here, we present the draft genome sequence of a female domestic yak generated using Illumina-based technology at 65-fold coverage. Genomic comparisons between yak and cattle identify an expansion in yak of gene families related to sensory perception and energy metabolism, as well as an enrichment of protein domains involved in sensing the extracellular environment and hypoxic stress. Positively selected and rapidly evolving genes in the yak lineage are also found to be significantly enriched in functional categories and pathways related to hypoxia and nutrition metabolism. These findings may have important implications for understanding adaptation to high altitude in other animal species and for hypoxia-related diseases in humans.

1 November 2015 in Biological Chemistry
Verified
Journal Article
Closed access
YWYi Wu
Yi Wu
LPLawrence A. Potempa
Lawrence A. Potempa
DKDriss El Kebir
Driss El Kebir
Janos FilepJanos Filep
Janos Filep
The prototypic acute-phase reactant C-reactive protein (CRP) has long been recognized as a useful marker and gauge of inflammation. CRP also plays an important role in host defense against invading pathogens as well as in inflammation. CRP consists of five identical subunits arranged as a cyclic pentamer. CRP exists in at least two conformationally distinct forms, i.e. native pentameric CRP (pCRP) and modified/monomeric CRP (mCRP). These isoforms bind to distinct receptors and lipid rafts, and exhibit distinct functional properties. Dissociation of pCRP into its subunits occurs within the inflammatory microenvironment and newly formed mCRP may then contribute to localizing the inflammatory response. Accumulating evidence indicates that pCRP possesses both pro- and anti-inflammatory actions in a context-dependent manner, whereas mCRP exerts potent pro-inflammatory actions on endothelial cells, endothelial progenitor cells, leukocytes and platelets, and thus may amplify inflammation. Here, we review recent advances that may explain how conformational changes in CRP contribute to shaping the inflammatory response and discuss CRP isomers as potential therapeutic targets to dampen inflammation.

20 November 2006 in The FASEB Journal
Verified
Journal Article
Closed access
PDF file
SJShang‐Rong Ji
Shang‐Rong Ji
YWYi Wu
Yi Wu
LZLi Zhu
Li Zhu
LPLawrence A. Potempa
Lawrence A. Potempa
FSFen‐Ling Sheng
Fen‐Ling Sheng
JZJing Zhao
Jing Zhao

19 August 2008 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Closed access
JJJiansen Jiang
Jiansen Jiang
XZXuefeng Zhang
Xuefeng Zhang
YCYong Chen
Yong Chen
YWYi Wu
Yi Wu
ZZZ. Hong Zhou
Z. Hong Zhou
SSSen-Fang Sui
Sen-Fang Sui
Cells use molecular chaperones and proteases to implement the essential quality control mechanism of proteins. The DegP (HtrA) protein, essential for the survival of Escherichia coli cells at elevated temperatures with homologues found in almost all organisms uniquely has both functions. Here we report a mechanism for DegP to activate both functions via formation of large cage-like 12- and 24-mers after binding to substrate proteins. Cryo-electron microscopic and biochemical studies revealed that both oligomers are consistently assembled by blocks of DegP trimers, via pairwise PDZ1–PDZ2 interactions between neighboring trimers. Such interactions simultaneously eliminate the inhibitory effects of the PDZ2 domain. Additionally, both DegP oligomers were also observed in extracts of E. coli cells, strongly implicating their physiological importance.

1 February 2002 in Journal of Biological Chemistry
Verified
Journal Article
Open access
PDF file
SJShang-Rong Ji
Shang-Rong Ji
YWYi Wu
Yi Wu
SSSen-Fang Sui
Sen-Fang Sui
β-Amyloid peptide (Aβ), a normal constituent of neuronal and non-neuronal cells, has been proven to be the major component of extracellular plaque of Alzheimer's disease. Interactions between Aβ and neuronal membranes have been postulated to play an important role in the neuropathology of Alzheimer's disease. Here we show that Aβ is able to insert into lipid bilayer. The membrane insertion ability of Aβ is critically controlled by the ratio of cholesterol to phospholipids. In a low concentration of cholesterol Aβ prefers to stay in membrane surface region mainly in a β-sheet structure. In contrast, as the ratio of cholesterol to phospholipids rises above 30 mol%, Aβ can insert spontaneously into lipid bilayer by its C terminus. During membrane insertion Aβ generates about 60% α-helix and removes almost all β-sheet structure. Fibril formation experiments show that such membrane insertion can reduce fibril formation. Our findings reveal a possible pathway by which Aβ prevents itself from aggregation and fibril formation by membrane insertion.

9 January 2009 in The FASEB Journal
Verified
Journal Article
Closed access
PDF file
SJShang-Rong Ji
Shang-Rong Ji
LMLe Ma
Le Ma
CBCai-Juan Bai
Cai-Juan Bai
JSJing-Ming Shi
Jing-Ming Shi
HLHai-Yun Li
Hai-Yun Li
YWYi Wu
Yi Wu