Nadezhda Palkina

Dr. Nadezhda Palkina


Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 January 2019 in BMC Dermatology
Verified
Journal Article
Open access
PDF file
MAMariya Aksenenko
Mariya Aksenenko
NPNadezhda Palkina
Nadezhda Palkina
ATAnna Tyumentseva
Anna Tyumentseva
LTLiubov Tashireva
Liubov Tashireva
TRTatyana Ruksha
Tatyana Ruksha
The tumor microenvironment is composed of cancer-associated fibroblasts, tumor-associated macrophages, endothelial cells, immune cells, signaling molecules and extracellular matrix structures, which closelycommunicate with the tumor via multiple mechanisms. MicroRNAs are paracrine regulators that provide a direct interaction between the microenvironment and cancer cells. In the presentstudy, we aimed to identify the microRNA expression profile in melanoma compared with thatin healthy adjacent skin, with a further assessment of altered microRNA signaling pathways and target genes. Formalin-fixed paraffin-embedded (FFPE) melanoma tissue samples were separated by dissection into tumor and surrounding health tissue fragments. MicroRNA expression profiles were obtained by microarray using Gene Atlas Microarray System (Affymetrix, California, USA). To confirm microarray results real-time PCR was carried out. Bioinformatic analysis was performed using the DIANA-miRPath v.3.0 database. Target genes for miR-146a-5p were determined using three algorithms: TargetScan 7.0, miRWalk 2.0 and miRTarBase v.4.5. A microarray profiling revealed 143 microRNAs asdifferent in tumor versus adjacent tissues. Expression level of hsa-miR-146a-5p showedto be higher in melanoma cells as compared to thehealthy adjacent skin. The bioinformatic study has determined several signaling cascades associated with miR-146a-5p:Toll-like receptor pathway, NF-κB pathway, ErB pathway, and measles signaling pathway. The 38 target genes have been shown for miR-146a-5p of which NRAS gene is known asone of the most frequent mutated in melanoma. Elucidation of the role of miR-146-a-5p in complex interactions between the tumor and the cells of healthy adjacent skin is necessary for our understanding of the mechanisms oftumor progression. Significant differences found between cancer cells and adjacent tissues in microRNA expression profile corresponding to divergent mRNA/protein levels in these structures should be taken into account when tumor samples characterization estimatedby high-throughput methods.

1 February 2025 in Non-coding RNA Research
Verified
Journal Article
Open access
ELEkaterina Lapkina
Ekaterina Lapkina
IZIvan Zinchenko
Ivan Zinchenko
VKViktoriya Kutcenko
Viktoriya Kutcenko
EBEugeniya Bondar
Eugeniya Bondar
AKAndrey Kirichenko
Andrey Kirichenko
TRTatyana Ruksha
Tatyana Ruksha
Cancer cell drug resistance hinders significantly therapeutic modalities in oncology. Dacarbazine is chemotherapeutic agent traditionally used for melanoma treatment although it's effectiveness insufficient. In the present study we performed NGS-based transcriptomic profiling of B16 melanoma tumors after Dacarbazine treatment in vivo. Whole transcriptome sequencing revealed 34 differentially expressed genes most of them associated with drug resistance and apoptosis evading. In accordance to bionformatic analysis, 6 signaling cascades: “D-Amino acid metabolism”, “NF-kappa B signaling pathway”, “Phosphatidylinositol signaling system”, “P53 signaling pathway”, “IL-17 signaling pathway” and “Bile secretion” were enriched by differentially expressed genes. Next we provided a combined treatment by Dacarbazine and miR-204-5p mimic as miR-204-5p was considered previously implicated in cancer drug resistance. This approach lead to an increase of miR-204-5p expression in B16 melanoma cells in vivo that was accompanied by subsequent decrease in the expression of miR-204-5p target genes – BCL2 and SIRT1 in the primary tumors. MiR-204-5p overexpression with Dacarbazine application resulted in increased the weight, and volume of primary tumors and diminished the proportion of β-Galactosidase expression in melanoma B16-bearing mice. Taking together, our study revealed that although miR-204-5p showed antiproliferative capacities in vitro, it's mimic in combination with Dacarbazine is able to potentiate tumor growth triggering probably a switch from senescent to proliferative phenotype of malignant cells.

3 June 2022 in Non-coding RNA Research
Verified
Journal Article
Open access
NPNadezhda Palkina
Nadezhda Palkina
MAMariya Aksenenko
Mariya Aksenenko
DZDanil Zemtsov
Danil Zemtsov
SLSemyon Lavrentev
Semyon Lavrentev
IZIvan Zinchenko
Ivan Zinchenko
TRTatyana Ruksha
Tatyana Ruksha
The treatment of melanoma remains a challenge, despite novel approaches recently becoming available for disseminated tumors. RNA targeting is being intensively studied in various types of disease. The aim of the present study was to explore whether the in vivo use of a microRNA (miR)-204-5p inhibitor affected melanoma progression, and whether its metastasis affects target organ remodeling. CD45RO+, CD3+, CD8+, forkhead box P3+, smooth muscle α-actin+ cells in the lungs of B16 melanoma-bearing mice were evaluated using immunohistochemistry following miR-204-5p inhibitor transfection. Next, CD45RO expression in peripheral blood mononuclear cells (PBMCs), as well as the apoptosis of these cells, were measured by flow cytometry. The results revealed that the number of CD45RO+ cells was decreased in the lungs of B16 melanoma-bearing mice and CD45RO+ PBMCs following the use of an miR-204-5p inhibitor, which was associated with increased levels of PBMC apoptosis. In conclusion, the findings of the present study suggested that targeting miR-204-5p in melanoma metastasis target organs could be used to develop novel approaches for the treatment of disseminated forms of the disease.

1 January 2022 in Современные проблемы науки и образования (Modern Problems of Science and Education)
Verified
Journal Article
Open access
NPNadezhda Palkina
Nadezhda Palkina
ELE.Z. Lapkina
E.Z. Lapkina
YFY.A. Fefelova
Y.A. Fefelova
ESEkaterina Sergeeva
Ekaterina Sergeeva

1 January 2023 in Современные проблемы науки и образования (Modern Problems of Science and Education)
Verified
Journal Article
Open access
NPNadezhda Palkina
Nadezhda Palkina
EOE.V. Okladnikova
E.V. Okladnikova
VMV.M. Merk
V.M. Merk
APA.V. Plokhikh
A.V. Plokhikh