Attila Karsi

Dr. Attila Karsi

orcid

Research Focus & Metrics

Academic Career Length

29Years (1998-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 August 2017 in Frontiers in Microbiology
Verified
Journal Article
Open access
HAHossam Abdelhamed
Hossam Abdelhamed
IIIman Ibrahim
Iman Ibrahim
WBWes Baumgartner
Wes Baumgartner
MLMark L. Lawrence
Mark L. Lawrence
AKAttila Karsi
Attila Karsi
A highly virulent clonal population of Aeromonas hydrophila (vAh) has been the cause of recent motile Aeromonas septicemia (MAS) epizootic in channel catfish (Ictalurus punctatus) farms in the Southeastern United States. The pathology of the disease caused by vAh has not been studied well yet. Thus, our aim was to determine histopathological and ultrastructural changes in channel catfish following vAh challenge. To accomplish this, catfish fingerlings were challenged with vAh (strain ML09-119) by bath. Six fish per each time point were collected at 1, 3, 5, 6, 24 and 48 h for light microscopy, and six fish were collected at 48 h for transmission electron microscopy (TEM). The first pathological lesions were detected in the spleen and stomach at 1 h post-challenge while intestine, gills, kidney, and liver lesions were observed at 24 and 48 h post-challenge. Histopathological examination revealed degenerative changes, necrosis, extensive edema, and inflammation in internal organs. The TEM showed severe tissue destruction with multiple bacterial cells secreting outer membrane vesicles, especially in spleen and gills and far number in the stomach. Degenerated bacterial cells were observed in the intestinal lumen and the phagosomes of phagocytic kidney cells. We identified, for the first time, degranulate eosinophilic granular cells, and dendritic cells like (DC-like) cells in the necrotic intestinal epithelium. These findings suggest that vAh rapidly proliferated and spread through the catfish organs following bath challenge.

29 December 2009 in Nucleic Acids Research
Verified
Journal Article
Open access
PDF file
RGRonald Godiska
Ronald Godiska
DMDavid Mead
David Mead
VDVinay Dhodda
Vinay Dhodda
CWChengcang Wu
Chengcang Wu
RHRebecca Hochstein
Rebecca Hochstein
Nikolai RavinNikolai Ravin
Nikolai Ravin
Despite recent advances in sequencing, complete finishing of large genomes and analysis of novel proteins they encode typically require cloning of specific regions. However, many of these fragments are extremely difficult to clone in current vectors. Superhelical stress in circular plasmids can generate secondary structures that are substrates for deletion, particularly in regions that contain numerous tandem or inverted repeats. Common vectors also induce transcription and translation of inserted fragments, which can select against recombinant clones containing open reading frames or repetitive DNA. Conversely, transcription from cloned promoters can interfere with plasmid stability. We have therefore developed a novel Escherichia coli cloning vector (termed ‘pJAZZ’ vector) that is maintained as a linear plasmid. Further, it contains transcriptional terminators on both sides of the cloning site to minimize transcriptional interference between vector and insert. We show that this vector stably maintains a variety of inserts that were unclonable in conventional plasmids. These targets include short nucleotide repeats, such as those of the expanded Fragile X locus, and large AT—rich inserts, such as 20-kb segments of genomic DNA from Pneumocystis, Plasmodium, Oxytricha or Tetrahymena. The pJAZZ vector shows decreased size bias in cloning, allowing more uniform representation of larger fragments in libraries.

14 February 2002 in Gene
Verified
Journal Article
Closed access
AKAttila Karsi
Attila Karsi
DCDongfeng Cao
Dongfeng Cao
PLPing Li
Ping Li
APAndrea Patterson
Andrea Patterson
AKArif Kocabas
Arif Kocabas
ZLZhanjiang Liu
Zhanjiang Liu

1 December 2000 in Gene
Verified
Journal Article
Closed access
ZJZhenlin Ju
Zhenlin Ju
AKAttila Karsi
Attila Karsi
AKArif Kocabas
Arif Kocabas
APAndrea Patterson
Andrea Patterson
PLPing Li
Ping Li
ZLZhanjiang Liu
Zhanjiang Liu

1 December 2002 in Marine Biotechnology
Verified
Journal Article
Closed access
PDF file
AKArif M. Kocabas
Arif M. Kocabas
PLPing Li
Ping Li
DCDongfeng Cao
Dongfeng Cao
AKAttila Karsi
Attila Karsi
CHChongbo He
Chongbo He
ZLZhanjiang Liu
Zhanjiang Liu

1 May 2007 in Plasmid
Verified
Journal Article
Closed access
AKAttila Karsi
Attila Karsi
MLMark L. Lawrence
Mark L. Lawrence