Jose Raniery Ferreira Junior

Dr. Jose Raniery Ferreira Junior


Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2019 in Radiologia Brasileira
Verified
Journal Article
Open access
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Marcel Koenigkam-SantosMarcel Koenigkam-Santos
Marcel Koenigkam-Santos
JJJose Raniery Ferreira Junior
Jose Raniery Ferreira Junior
DWDanilo Tadao Wada
Danilo Tadao Wada
ATAriane Priscilla Magalhães Tenório
Ariane Priscilla Magalhães Tenório
MNMarcello Nogueira-Barbosa
Marcello Nogueira-Barbosa
PMPaulo Mazzoncini de Azevedo Marques
Paulo Mazzoncini de Azevedo Marques
The discipline of radiology and diagnostic imaging has evolved greatly in recent years. We have observed an exponential increase in the number of exams performed, subspecialization of medical fields, and increases in accuracy of the various imaging methods, making it a challenge for the radiologist to “know everything about all exams and regions”. In addition, imaging exams are no longer only qualitative and diagnostic, providing now quantitative information on disease severity, as well as identifying biomarkers of prognosis and treatment response. In view of this, computer-aided diagnosis systems have been developed with the objective of complementing diagnostic imaging and helping the therapeutic decision-making process. With the advent of artificial intelligence, “big data”, and machine learning, we are moving toward the rapid expansion of the use of these tools in daily life of physicians, making each patient unique, as well as leading radiology toward the concept of multidisciplinary approach and precision medicine. In this article, we will present the main aspects of the computational tools currently available for analysis of images and the principles of such analysis, together with the main terms and concepts involved, as well as examining the impact that the development of artificial intelligence has had on radiology and diagnostic imaging.

1 June 2018 in Computer Methods and Programs in Biomedicine
Verified
Journal Article
Closed access
JJJose Raniery Ferreira Junior
Jose Raniery Ferreira Junior
Marcel Koenigkam-SantosMarcel Koenigkam-Santos
Marcel Koenigkam-Santos
FCFederico Enrique Garcia Cipriano
Federico Enrique Garcia Cipriano
AFAlexandre Todorovic Fabro
Alexandre Todorovic Fabro
PAPaulo Mazzoncini de Azevedo-Marques
Paulo Mazzoncini de Azevedo-Marques

7 May 2020 in Advances in Rheumatology
Verified
Journal Article
Open access
PDF file
MFMatheus Calil Faleiros
Matheus Calil Faleiros
MNMarcello Nogueira-Barbosa
Marcello Nogueira-Barbosa
VDVitor Faeda Dalto
Vitor Faeda Dalto
JJJose Raniery Ferreira Junior
Jose Raniery Ferreira Junior
ATAriane Priscilla Magalhães Tenório
Ariane Priscilla Magalhães Tenório
PAPaulo Mazzoncini de Azevedo-Marques
Paulo Mazzoncini de Azevedo-Marques
Background: Currently, magnetic resonance imaging (MRI) is used to evaluate active inflammatory sacroiliitis related to axial spondyloarthritis (axSpA). The qualitative and semiquantitative diagnosis performed by expert radiologists and rheumatologists remains subject to significant intrapersonal and interpersonal variation. This encouraged us to use machine-learning methods for this task. Methods: In this retrospective study including 56 sacroiliac joint MRI exams, 24 patients had positive and 32 had negative findings for inflammatory sacroiliitis according to the ASAS group criteria. The dataset was randomly split with ~ 80% (46 samples, 20 positive and 26 negative) as training and ~ 20% as external test (10 samples, 4 positive and 6 negative). After manual segmentation of the images by a musculoskeletal radiologist, multiple features were extracted. The classifiers used were the Support Vector Machine, the Multilayer Perceptron (MLP), and the Instance-Based Algorithm, combined with the Relief and Wrapper methods for feature selection. Results: Based on 10-fold cross-validation using the training dataset, the MLP classifier obtained the best performance with sensitivity = 100%, specificity = 95.6% and accuracy = 84.7%, using 6 features selected by the Wrapper method. Using the test dataset (external validation) the same MLP classifier obtained sensitivity = 100%, specificity = 66.7% and accuracy = 80%. Conclusions: Our results show the potential of machine learning methods to identify SIJ subchondral bone marrow edema in axSpA patients and are promising to aid in the detection of active inflammatory sacroiliitis on MRI STIR sequences. Multilayer Perceptron (MLP) achieved the best results.

13 November 2019 in International Journal of Computer Assisted Radiology and Surgery
Verified
Journal Article
Closed access
PDF file
JJJose Raniery Ferreira Junior
Jose Raniery Ferreira Junior
MKMarcel Koenigkam-Santos
Marcel Koenigkam-Santos
ATAriane Priscilla Magalhães Tenório
Ariane Priscilla Magalhães Tenório
MFMatheus Calil Faleiros
Matheus Calil Faleiros
FCFederico Enrique Garcia Cipriano
Federico Enrique Garcia Cipriano
PAPaulo Mazzoncini de Azevedo-Marques
Paulo Mazzoncini de Azevedo-Marques

1 July 2020
Verified
Conference Paper
Open access
JJJose Raniery Ferreira Junior
Jose Raniery Ferreira Junior
DCDiego Armando Cardona Cardenas
Diego Armando Cardona Cardenas
RMRamon Alfredo Moreno
Ramon Alfredo Moreno
MRMarina de Fatima de Sa Rebelo
Marina de Fatima de Sa Rebelo
JKJose Eduardo Krieger
Jose Eduardo Krieger
MGMarco Antonio Gutierrez
Marco Antonio Gutierrez
Pneumonia is one of the leading causes of childhood mortality worldwide. Chest x-ray (CXR) can aid the diagnosis of pneumonia, but in the case of low contrast images, it is important to include computational tools to aid specialists. Deep learning is an alternative because it can identify patterns automatically, even in low-resolution images. We propose herein a convolutional neural network (CNN) architecture with different training strategies towards detecting pneumonia on CXRs and distinguishing its subforms of bacteria and virus. We also evaluated different image pre-processing methods to improve the classification. This study used CXRs from pediatric patients from a public pneumonia CXR dataset. The pre-processing methods evaluated were image cropping and histogram equalization. To classify the images, we adopted the VGG16 CNN and replaced its fully-connected layers with a customized multilayer perceptron. With this architecture, we proposed and evaluated four different training strategies: original CXR image (baseline), chest-cavity-cropped image (A), and histogram-equalized segmented image (B). The last strategy method (C) implemented is based on ensemble between strategies A and B. The performance was assessed by the area under the ROC curve (AUC) with 95% confidence interval (CI), accuracy, sensitivity, specificity, and F1-score. The ensemble model C yielded the highest performances: AUC of 0.97 (CI: 0.96–0.99) to classify pneumonia vs. normal, and AUC of 0.91 (CI: 0.88–0.94) to classify bacterial vs. viral cases. All models that used pre-processed images showed higher AUC than baseline, which used the original CXR image. Image cropping and histogram equalization reduced irrelevant information from the exam, enhanced contrast, and was able to identify fine CXR texture details. The proposed ensemble model increased the representation of inflammatory patterns from bacteria and viruses with few epochs to train the deep CNNs.Clinical relevance— Deep learning can identify complex radiographic patterns in low contrast images due to pneumonia and distinguish its subforms of bacteria and virus. The correlation of imaging with lab results could accelerate the adoption of complementary exams to confirm the disease’s cause

18 October 2017 in Journal of Digital Imaging
Verified
Journal Article
Closed access
JJJose Raniery Ferreira Junior
Jose Raniery Ferreira Junior
MOMarcelo Costa Oliveira
Marcelo Costa Oliveira
PAPaulo Mazzoncini de Azevedo-Marques
Paulo Mazzoncini de Azevedo-Marques