Alina Bora

Dr. Alina Bora

Computational Chemistry, “Coriolan Dragulescu” Institute of Chemistry, Romanian Academy, 24 Mihai Viteazu Ave., 300223 Timisoara, Romania
orcid

Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 November 2020 in Nucleic Acids Research
Verified
Journal Article
Open access
SASorin Avram
Sorin Avram
CBCristian G Bologa
Cristian G Bologa
JHJayme Holmes
Jayme Holmes
GBGiovanni Bocci
Giovanni Bocci
TWThomas B Wilson
Thomas B Wilson
TOTudor I Oprea
Tudor I Oprea
DrugCentral is a public resource (http://drugcentral.org) that serves the scientific community by providing up-to-date drug information, as described in previous papers. The current release includes 109 newly approved (October 2018 through March 2020) active pharmaceutical ingredients in the US, Europe, Japan and other countries; and two molecular entities (e.g. mefuparib) of interest for COVID19. New additions include a set of pharmacokinetic properties for ∼1000 drugs, and a sex-based separation of side effects, processed from FAERS (FDA Adverse Event Reporting System); as well as a drug repositioning prioritization scheme based on the market availability and intellectual property rights forFDA approved drugs. In the context of the COVID19 pandemic, we also incorporated REDIAL-2020, a machine learning platform that estimates anti-SARS-CoV-2 activities, as well as the ‘drugs in news’ feature offers a brief enumeration of the most interesting drugs at the present moment. The full database dump and data files are available for download from the DrugCentral web portal.

9 December 2022 in Nucleic Acids Research
Verified
Journal Article
Open access
PDF file
SASorin Avram
Sorin Avram
TWThomas B Wilson
Thomas B Wilson
RCRamona Curpan
Ramona Curpan
LHLiliana Halip
Liliana Halip
Ana BorotaAna Borota
Ana Borota
TOTudor I Oprea
Tudor I Oprea
DrugCentral monitors new drug approvals and standardizes drug information. The current update contains 285 drugs (131 for human use). New additions include: (i) the integration of veterinary drugs (154 for animal use only), (ii) the addition of 66 documented off-label uses and iii) the identification of adverse drug events from pharmacovigilance data for pediatric and geriatric patients. Additional enhancements include chemical substructure searching using SMILES and ‘Target Cards’ based on UniProt accession codes. Statistics of interests include the following: (i) 60% of the covered drugs are on-market drugs with expired patent and exclusivity coverage, 17% are off-market, and 23% are on-market drugs with active patents and exclusivity coverage; (ii) 59% of the drugs are oral, 33% are parenteral and 18% topical, at the level of the active ingredients; (iii) only 3% of all drugs are for animal use only; however, 61% of the veterinary drugs are also approved for human use; (iv) dogs, cats and horses are by far the most represented target species for veterinary drugs; (v) the physicochemical property profile of animal drugs is very similar to that of human drugs. Use cases include azaperone, the only sedative approved for swine, and ruxolitinib, a Janus kinase inhibitor.

23 February 2007
Verified
Book Chapter
Closed access
PDF file
MOMarius Olah
Marius Olah
RRRamona Rad
Ramona Rad
LOLiliana Ostopovici
Liliana Ostopovici
Alina BoraAlina Bora
Alina Bora
NHNicoleta Hadaruga
Nicoleta Hadaruga
TOTudor I. Oprea
Tudor I. Oprea

Verified
Journal Article
Open access
PDF file
LPLiliana Pacureanu
Liliana Pacureanu
Alina BoraAlina Bora
Alina Bora
Luminita CrisanLuminita Crisan
Luminita Crisan
To facilitate the identification of novel MAO-B inhibitors, we elaborated a consolidated computational approach, including a pharmacophoric atom-based 3D quantitative structure–activity relationship (QSAR) model, activity cliffs, fingerprint, and molecular docking analysis on a dataset of 126 molecules. An AAHR.2 hypothesis with two hydrogen bond acceptors (A), one hydrophobic (H), and one aromatic ring (R) supplied a statistically significant 3D QSAR model reflected by the parameters: R2 = 0.900 (training set); Q2 = 0.774 and Pearson’s R = 0.884 (test set), stability s = 0.736. Hydrophobic and electron-withdrawing fields portrayed the relationships between structural characteristics and inhibitory activity. The quinolin-2-one scaffold has a key role in selectivity towards MAO-B with an AUC of 0.962, as retrieved by ECFP4 analysis. Two activity cliffs showing meaningful potency variation in the MAO-B chemical space were observed. The docking study revealed interactions with crucial residues TYR:435, TYR:326, CYS:172, and GLN:206 responsible for MAO-B activity. Molecular docking is in consensus with and complementary to pharmacophoric 3D QSAR, ECFP4, and MM-GBSA analysis. The computational scenario provided here will assist chemists in quickly designing and predicting new potent and selective candidates as MAO-B inhibitors for MAO-B-driven diseases. This approach can also be used to identify MAO-B inhibitors from other libraries or screen top molecules for other targets involved in suitable diseases.

26 April 2016 in Journal of Chemical Information and Modeling
Verified
Journal Article
Closed access
Alina BoraAlina Bora
Alina Bora
SASorin Avram
Sorin Avram
ICIonel Ciucanu
Ionel Ciucanu
MRMarius Raica
Marius Raica
SAStefana Avram
Stefana Avram

1 November 2003 in Phosphorus, Sulfur, and Silicon and the Related Elements
Verified
Journal Article
Closed access
Gheorghe IliaGheorghe Ilia
Gheorghe Ilia
Alina BoraAlina Bora
Alina Bora
SISmaranda Iliescu
Smaranda Iliescu
APAdriana Popa
Adriana Popa
GDGheorghe Dehelean
Gheorghe Dehelean
A new route for the synthesis of some mixed organic phosphorus compounds from 1,3-dioxolan-2-one is reported. By heating a mixture of phosphorus-chlorine derivatives and 1,3-dioxolan-2-one in the presence of a catalyst, mixed phosphorus derivatives having 2-chloroethyl ester groups could be obtained. A wide range of phosphorus derivatives can be obtained using this method.