Mark D McDonnell

Dr. Mark D McDonnell


Research Focus & Metrics

Academic Career Length

26Years (2001-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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20 June 2011 in Nature Reviews Neuroscience
Verified
Journal Article
Closed access
MMMark D McDonnell
Mark D McDonnell
LWLawrence M. Ward
Lawrence M. Ward

29 May 2009 in PLOS Computational Biology
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Journal Article
Open access
PDF file
MMMark D McDonnell
Mark D McDonnell
DADerek Abbott
Derek Abbott
Stochastic resonance is said to be observed when increases in levels of unpredictable fluctuations—e.g., random noise—cause an increase in a metric of the quality of signal transmission or detection performance, rather than a decrease. This counterintuitive effect relies on system nonlinearities and on some parameter ranges being “suboptimal”. Stochastic resonance has been observed, quantified, and described in a plethora of physical and biological systems, including neurons. Being a topic of widespread multidisciplinary interest, the definition of stochastic resonance has evolved significantly over the last decade or so, leading to a number of debates, misunderstandings, and controversies. Perhaps the most important debate is whether the brain has evolved to utilize random noise in vivo, as part of the “neural code”. Surprisingly, this debate has been for the most part ignored by neuroscientists, despite much indirect evidence of a positive role for noise in the brain. We explore some of the reasons for this and argue why it would be more surprising if the brain did not exploit randomness provided by noise—via stochastic resonance or otherwise—than if it did. We also challenge neuroscientists and biologists, both computational and experimental, to embrace a very broad definition of stochastic resonance in terms of signal-processing “noise benefits”, and to devise experiments aimed at verifying that random variability can play a functional role in the brain, nervous system, or other areas of biology.

26 December 2016
Verified
Conference Paper
Closed access
SWSebastien C. Wong
Sebastien C. Wong
AGAdam Gatt
Adam Gatt
VSVictor Stamatescu
Victor Stamatescu
MMMark D McDonnell
Mark D McDonnell
In this paper we investigate the benefit of augmenting data with synthetically created samples when training a machine learning classifier. Two approaches for creating additional training samples are data warping, which generates additional samples through transformations applied in the data-space, and synthetic over-sampling, which creates additional samples in feature-space. We experimentally evaluate the benefits of data augmentation for a convolutional backpropagation-trained neural network, a convolutional support vector machine and a convolutional extreme learning machine classifier, using the standard MNIST handwritten digit dataset. We found that while it is possible to perform generic augmentation in feature-space, if plausible transforms for the data are known then augmentation in data-space provides a greater benefit for improving performance and reducing overfitting.

1 June 2002 in Environmental Modeling & Assessment
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Journal Article
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MMMark D McDonnell
Mark D McDonnell
HPHugh Philip Possingham
Hugh Philip Possingham
IBIan R. Ball
Ian R. Ball
ECElizabeth A. Cousins
Elizabeth A. Cousins

2 October 2008
Verified
Book
Closed access
MMMark D McDonnell
Mark D McDonnell
NSNigel G. Stocks
Nigel G. Stocks
CPCharles E. M. Pearce
Charles E. M. Pearce
DADerek Abbott
Derek Abbott
Stochastic resonance has been observed in many forms of systems, and has been hotly debated by scientists for over 30 years. Applications incorporating aspects of stochastic resonance may yet prove revolutionary in fields such as distributed sensor networks, nano-electronics, and biomedical prosthetics. Ideal for researchers in fields ranging from computational neuroscience through to electronic engineering, this book addresses in detail various theoretical aspects of stochastic quantization, in the context of the suprathreshold stochastic resonance effect. Initial chapters review stochastic resonance and outline some of the controversies and debates that have surrounded it. The book then discusses suprathreshold stochastic resonance, and its extension to more general models of stochastic signal quantization. Finally, it considers various constraints and tradeoffs in the performance of stochastic quantizers, before culminating with a chapter in the application of suprathreshold stochastic resonance to the design of cochlear implants.

18 August 2016 in BMC Neuroscience
Verified
Journal Article
Open access
TEthe EyeWirers
the EyeWirers
TSTatyana O. Sharpee
Tatyana O. Sharpee
ADAlain Destexhe
Alain Destexhe
MKMitsuo Kawato
Mitsuo Kawato
VSVladislav Sekulić
Vladislav Sekulić
KCKarishma Chhabria
Karishma Chhabria
A1 Functional advantages of cell-type heterogeneity in neural circuits