Within Europe over the last 10 years, there has been an increase in seaweeds cultivated for human consumption. For food safety reasons, it is important to assess the microbiological and nutritional quality of the biomass. The fresh and dried edible seaweeds Alaria esculenta and Saccharina latissima were assessed over two consecutive years for the presence of microorganisms. Seaweed samples supplied from Scotland were stored under isothermal conditions for specific time intervals depending on the sample’s condition (fresh, dried or rehydrated). During storage, microbiological analyses were performed for the enumeration of Total Viable Counts (TVC), Pseudomonas spp., Enterobacteriaceae and Bacillus spp., as well as yeasts and molds. Additionally, bacterial colonies from the Marine Agar growth medium were isolated and subjected to PCR-RAPD analysis for characterization of the bacterial diversity of seaweeds. Bacterial isolates with different fingerprint patterns were further subjected to sequencing (16S rDNA, V1–V4 region). The presence of human pathogenic bacteria was also investigated. Results showed that the initial population of TVC was differentiated depending on the year of seaweed harvest, being closer to the enumeration limit (1.0 log CFU/g) in fresh samples from 2020 and higher in samples from 2019 (6.7 and 3.9 log CFU/g in A. esculenta and S. latissima, respectively). DNA-based analysis revealed the presence of Psychrobacter, Cobetia and Pseudomonas species in A. esculenta, while Psychrobacter and Micrococcus species were present in S. latissima.

Recirculation technology has been emerging in the marine aquaculture industry. The microbiome developed in recirculation aquaculture systems (RASs) is an important factor for the optimal operation of these systems and fish welfare. In this study, the microbial community dynamics in the water column and the biofilms of a marine RAS with Mediterranean species of gilthead sea bream and sea bass were investigated, while physicochemical conditions were also monitored. Microbiological, culture, and non-culture analyses based on PCR-Denaturing Gradient Gel Electrophoresis (PCR-DGGE) fingerprints were performed on the water column and biofilm developed on stainless-steel surfaces. According to the obtained results, feed administration seemed to cause changes in pH and TAN, as well as drive changes in the bacterial abundance in the water column. Tested surfaces were colonized within 24 h and sessile cells were stabilized in terms of density within 6 days. DGGE fingerprints indicated the stability of the microbial community in water and a dynamic succession in the community of the biofilms. The fish pathogen Tenacibaculum discolor was found to colonize the biofilm and the water column. The main findings confirmed that RAS technology can be used as a control strategy for the stability of the water microbial community, that there is a dynamic succession of the dominant species in the biofilm communities, and that pathogenic bacteria can be dominant in the latter.

This study aimed to evaluate the efficiency of an integrated multi-trophic aquaculture (IMTA) system comprising co-cultured fed fish and organic extractive species representing three distinct trophic levels as well as the impact and potential utilization of two commercially available fish feeds made up of 35% fish meal (FM) and 20% fish meal (LFM) ingredients, using a multi-indicator assessment approach. Significant alterations were observed in growth performance indicators (GPIs), water and sediment quality indices, toxicity tests and biomarkers within the IMTA system. The fish survival, weight gain (WG), and specific growth rate (SGR) were higher in the IMTA system with significantly lower feed conversion ratios (FCRs) and higher feed efficiency (FE) in comparison to the fed fish monoculture system. Yet, organic filter feeders displayed 100% survival, and increased shell growth, while deposit feeders exhibited successful survival and significant weight gain. In the comparison between FM-IMTA and LFM-IMTA, fed fish in FM-IMTA showed higher WG, SGR, and FE with lower FCR. Environmental parameters like temperature, oxygen, and nutrient concentrations fluctuated but generally improved in the IMTA system, indicating lower mesotrophic conditions. Sediment fatty acid profiles differed between systems and toxicity assessments, which suggested a lower impact in IMTA and FM-IMTA systems. The sediment microbial community displayed high similarity within IMTA systems and between FM-IMTA and LFM-IMTA. These findings underscore the potential of IMTA systems for sustainable aquaculture, emphasizing improved growth performance and reduced environmental impact, particularly when using fish meal feeds.

Tenacibaculum discolor develops biofilm in marine aquaculture production tanks and is identified as one of the causative agents of tenacibaculosis, a bacterial disease that causes significant losses in marine aquaculture production. In this study, the biofilm characteristics of T. discolor strain FMCC B487 were evaluated. Cell growth and biofilm formation and development were studied in miniaturized assays to assess the effect of different levels of environmental factors temperature and salinity, as well as the presence of monosaccharides potentially found in aquaculture hatcheries. The ability of the strain to grow and develop strong biofilms in ambient to high temperatures and at salinities above 20 g/L was shown. Mannose was the monosaccharide with the most prominent impact on the T. discolor strain FMCC B487 biofilm. The composition of planktonic cell extract, biofilm extracts, and extracellular polymeric substances (EPS) produced by T. discolor strain FMCC B487 were investigated by means of colorimetric and fluorometric assays as well as analyses by electrophoresis, gas chromatography, and high-performance size-exclusion chromatography coupled with a multiangle light scattering detector, revealing the dominance of proteins and lipids and the absence of high-molecular-weight polysaccharides. This information may serve as a basis for considering anti-biofilm strategies against the pathogen T. discolor.

Tenacibaculosis is a major bacterial disease in aquaculture, with Tenacibaculum discolor being characterized as one of the causative agents. This study evaluated the antimicrobial and antibiofilm potential of three isolated Pseudoalteromonas strains—Pseudoalteromonas sp. GY795-2 (deep-sea), Pseudoalteromonas spongiae MB2 (aquaculture installation), and Pseudoalteromonas tetraodonis SAE 20 (kelps)—against T. discolor strain FMCC B487. Cell-free supernatants (SNs) from each Pseudoalteromonas culture were tested in microtiter assays, assessing planktonic growth measured by OD₆₀₀ and biofilm biomass quantified by crystal violet (CV) staining. The addition of the Pseudoalteromonas SNs affected both growth and biofilm development of T. discolor strain FMCC B487. A significant decrease in T. discolor strain FMCC B487 growth and biofilm was observed in the presence of P. spongiae MB2 SN, whereas the SN of Pseudoalteromonas sp. GY795-2 promoted both growth and biofilm development of T. discolor strain FMCC B487. To assess whole-cell activity, dual-species biofilms were formed on plastic surfaces. After 24 h, all three Pseudoalteromonas strains reduced the viable T. discolor strain FMCC B487 population while maintaining their own cell numbers comparable to single-culture controls, suggesting an inhibitory interaction. These results demonstrate that these Pseudoalteromonas strains’ metabolites and cells can modulate T. discolor growth and biofilm development, highlighting their potential as biocontrol agents in aquaculture.