Background: Machine learning (ML) has made a significant impact in medicine and cancer research; however, its impact in these areas has been undeniably slower and more limited than in other application domains. A major reason for this has been the lack of availability of patient data to the broader ML research community, in large part due to patient privacy protection concerns. High-quality, realistic, synthetic datasets can be leveraged to accelerate methodological developments in medicine. By and large, medical data is high dimensional and often categorical. These characteristics pose multiple modeling challenges. Methods: In this paper, we evaluate three classes of synthetic data generation approaches; probabilistic models, classification-based imputation models, and generative adversarial neural networks. Metrics for evaluating the quality of the generated synthetic datasets are presented and discussed. Results: While the results and discussions are broadly applicable to medical data, for demonstration purposes we generate synthetic datasets for cancer based on the publicly available cancer registry data from the Surveillance Epidemiology and End Results (SEER) program. Specifically, our cohort consists of breast, respiratory, and non-solid cancer cases diagnosed between 2010 and 2015, which includes over 360,000 individual cases. Conclusions: We discuss the trade-offs of the different methods and metrics, providing guidance on considerations for the generation and usage of medical synthetic data.

The fidelity of climate projections is often undermined by biases in climate models due to their simplification or misrepresentation of unresolved climate processes. While various bias correction methods have been developed to post‐process model outputs to match observations, existing approaches usually focus on limited, low‐order statistics, or break either the spatiotemporal consistency of the target variable, or its dependency upon model resolved dynamics. We develop a Regularized Adversarial Domain Adaptation (RADA) methodology to overcome these deficiencies, and enhance efficient identification and correction of climate model biases. Instead of pre‐assuming the spatiotemporal characteristics of model biases, we apply discriminative neural networks to distinguish historical climate simulation samples and observation samples. The evidences based on which the discriminative neural networks make distinctions are applied to train the domain adaptation neural networks to bias correct climate simulations. We regularize the domain adaptation neural networks using cycle‐consistent statistical and dynamical constraints. An application to daily precipitation projection over the contiguous United States shows that our methodology can correct all the considered moments of daily precipitation at approximately resolution, ensures spatiotemporal consistency and inter‐field correlations, and can discriminate between different dynamical conditions. Our methodology offers a powerful tool for disentangling model parameterization biases from their interactions with the chaotic evolution of climate dynamics, opening a novel avenue toward big‐data enhanced climate predictions.

This paper provides an overview of the Speaker Anti-spoofing Competition organized by Biometric group at Idiap Research Institute for the IEEE International Conference on Biometrics: Theory, Applications, and Systems (BTAS 2016). The competition used AVspoof database, which contains a comprehensive set of presentation attacks, including, (i) direct replay attacks when a genuine data is played back using a laptop and two phones (Samsung Galaxy S4 and iPhone 3G), (ii) synthesized speech replayed with a laptop, and (iii) speech created with a voice conversion algorithm, also replayed with a laptop. The paper states competition goals, describes the database and the evaluation protocol, discusses solutions for spoofing or presentation attack detection submitted by the participants, and presents the results of the evaluation.

Alzheimer’s disease (AD), the most common type of dementia, not only imposes a huge financial burden on the health care system, but also a psychological and emotional burden on patients and their families. There is thus an urgent need to infer trajectories of cognitive performance over time and identify biomarkers predictive of the progression. In this article, we propose the multi-task learning with fused Laplacian sparse group lasso model, which can identify biomarkers closely related to cognitive measures due to its sparsity-inducing property, and model the disease progression with a general weighted (undirected) dependency graphs among the tasks. An efficient alternative directions method of multipliers based optimization algorithm is derived to solve the proposed non-smooth objective formulation. The effectiveness of the proposed model is demonstrated by its superior prediction performance over multiple state-of-the-art methods and accurate identification of compact sets of cognition-relevant imaging biomarkers that are consistent with prior medical studies.

Multi-task learning (MTL) aims to improve generalization performance by learning multiple related tasks simultaneously. While sometimes the underlying task relationship structure is known, often the structure needs to be estimated from data at hand. In this paper, we present a novel family of models for MTL, applicable to regression and classification problems, capable of learning the structure of task relationships. In particular, we consider a joint estimation problem of the task relationship structure and the individual task parameters, which is solved using alternating minimization. The task relationship structure learning component builds on recent advances in structure learning of Gaussian graphical models based on sparse estimators of the precision (inverse covariance) matrix. We illustrate the effectiveness of the proposed model on a variety of synthetic and benchmark datasets for regression and classification. We also consider the problem of combining climate model outputs for better projections of future climate, with focus on temperature in South America, and show that the proposed model outperforms several existing methods for the problem.