Glyphosate-based herbicides (GBHs) are widely used in agriculture, raising concerns about neuroendocrine and metabolic disruption, particularly during critical developmental windows. This study evaluated the effects of pubertal GBH exposure on biometric, metabolic, hepatic, and endocrine parameters in adult female and male mice. From postnatal weeks 4 to 8, C57Bl/6 mice received daily oral gavage with distilled water [control (CTL)] or 50 mg/kg body weight (BW) of GBH. At 21 weeks, biometric, biochemical, and hormonal parameters were analyzed. BW, Lee index, and abdominal fat were not affected by GBH exposure in either sex. Similarly, glycemia, lipidemia, insulinemia, glucose tolerance, and insulin sensitivity did not differ between groups. However, GBH exposure induced sex-specific changes in hepatic cholesterol: GBH females exhibited reduced esterified cholesterol (e-CHOL), whereas males showed increased e-CHOL and free CHOL. No significant hormonal changes were observed in GBH-exposed females. In contrast, males exhibited decreased follicle-stimulating hormone levels and increased testosterone and thyroid-stimulating hormone concentrations in adulthood. These results suggest that pubertal exposure to GBH, even at a dose considered safe by regulatory agencies, can induce long-lasting, sex-specific alterations in hepatic lipid metabolism and endocrine function, reinforcing concerns about GBHs as potential endocrine and metabolic disruptors.