Household biogas digesters are widely used to harvest energy in rural areas of developing countries. Understanding core prokaryotic communities, their co-occurrence patterns, and their relationships to environmental factors is important to manage these small-scale anaerobic digestion systems effectively. In this study, 43 household biogas digesters were collected across eight provinces in China. Prokaryotic communities were investigated using 454 pyrosequencing of 16S rRNA genes. Fourteen core genera and ten core OTUs were identified in household biogas digesters. They were mainly affiliated with the phylum Firmicutes, Synergistetes, Actinobacteria, Chloroflexi, and Spirochaetes. Core prokaryotic genera were mainly composed of Clostridium, Clostridium XI, Syntrophomonas, Cloacibacillus, Sedimentibacter, and Turicibacter. Prokaryotic communities in the 43 samples were clearly divided into two clusters. Cluster I was dominated by Clostridium, while Cluster II was dominated by members of Spirochaetes, Bacteroidales, Clostridia, and abundant syntrophs and methanogens. NH4 +-N and COD contributed significantly to the assembly of the prokaryotic community in Cluster I, while NH4 +-N, pH, and phosphate contributed significantly to Cluster II. Correlation-based network analysis showed that the prokaryotic communities in the biogas digesters were dominated by some functional modules. Cluster I was dominated by acetotrophic methanogenic modules and the Clostridium-driven primary fermentation module, while the network of Cluster II was dominated by hydrogenotrophic and acetogenic methanogenesis modules and multi-group-driven (Spirochaetes, Bacteroidales, and Clostridia) primary fermentation modules. The network of Cluster II was more complex and functionally redundant. Prokaryotic communities identified in the household biogas digesters varied significantly and were affected by environmental factors, such as NH4 +-N, pH, and COD. However, core prokaryotic communities existed, and most of them were also dominant populations. Cosmopolitan OTUs tended to co-occur. Prokaryotic communities in biogas digesters were well organized by some functional modules. The modular structure of the prokaryotic community, which has functional redundancy, enhances the resistance against environmental stress and maintains digestion efficiency in the anaerobic digestion process.

With the further development of anaerobic digestion, an increasing output of anaerobically digested wastewater (ADW), which typically contained high concentrations of ammonium, phosphate, and suspended solids, was inevitable. Microalgae cultivation offered a potential waste-to-value strategy to reduce the high nutrient content in ADW and obtain high value-added microalgae. However, ADW generally contained a mass of pollutants (suspended solids, competitors, etc.), which could inhibit microalgae growth and even result in microalgae death by limiting light utilization. Thus, it is highly imperative to solve the problem by a novel modified photobioreactor for further practical applications. Four microalgae species, Scenedesmus dimorphus, Scenedesmus quadricauda, Chlorella sorokiniana, and Chlorella vulgaris ESP-6, were cultivated in the membrane photobioreactor (MPBR) fed with ADW to investigate the efficiency of ammonia and phosphorus removal. The results showed that C. sorokiniana had the best performance for the removal of ammonia and phosphorus from ADW. The highest amount of C. sorokiniana biomass was 1.15 g/L, and the removal efficiency of phosphate (66.2%) peaked at an ammonia concentration of 128.5 mg/L after 9 days’ incubation. Moreover, the MPBR with 0.1 μm membrane pore size had the best ammonia and phosphate removal efficiencies (43.9 and 64.9%) at an ammonia concentration of 128.5 mg/L during 9 days’ incubation. Finally, the continuous multi-batch cultivation of C. sorokiniana was performed for 45 days in MPBR, and higher removal ammonia amount (18.1 mg/day) and proteins content (45.6%) were obtained than those (14.5 mg/day and 37.4%) in an normal photobioreactor. In this study, a novel MPBR not only eliminated the inhibitory effects of suspended solid and microorganisms, but also maintained a high microalgae concentration to obtain a high amount of ammonia and phosphate removal. The research provided a theoretical foundation for the practical application of MPBRs in various wastewater treatment schemes without pretreatment by algae, which could be used as biofuels or protein feed.