Nathaniel Virgo

Dr. Nathaniel Virgo


Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 August 2016 in Artificial Life
Verified
Journal Article
Open access
TTTim Taylor
Tim Taylor
MBMark Bedau
Mark Bedau
ACAlastair Channon
Alastair Channon
DADavid Ackley
David Ackley
WBWolfgang Banzhaf
Wolfgang Banzhaf
MWMichael Wiser
Michael Wiser
We describe the content and outcomes of the First Workshop on Open-Ended Evolution: Recent Progress and Future Milestones (OEE1), held during the ECAL 2015 conference at the University of York, UK, in July 2015. We briefly summarize the content of the workshop's talks, and identify the main themes that emerged from the open discussions. Two important conclusions from the discussions are: (1) the idea of pluralism about OEE—it seems clear that there is more than one interesting and important kind of OEE; and (2) the importance of distinguishing observable behavioral hallmarks of systems undergoing OEE from hypothesized underlying mechanisms that explain why a system exhibits those hallmarks. We summarize the different hallmarks and mechanisms discussed during the workshop, and list the specific systems that were highlighted with respect to particular hallmarks and mechanisms. We conclude by identifying some of the most important open research questions about OEE that are apparent in light of the discussions. The York workshop provides a foundation for a follow-up OEE2 workshop taking place at the ALIFE XV conference in Cancún, Mexico, in July 2016. Additional materials from the York workshop, including talk abstracts, presentation slides, and videos of each talk, are available at http://alife.org/ws/oee1 .

1 December 2015
Verified
Open access
CSCaleb Scharf
Caleb Scharf
NVNathaniel Virgo
Nathaniel Virgo
HCH. James Cleaves
H. James Cleaves
MAMasashi Aono
Masashi Aono
NANathanael Aubert-Kato
Nathanael Aubert-Kato
HYHikaru Yabuta
Hikaru Yabuta
Contents 1. Introduction 1.1. A workshop and this document 1.2. Framing origins of life science 1.2.1. What do we mean by the origins of life (OoL)? 1.2.2. Defining life 1.2.3. How should we characterize approaches to OoL science? 1.2.4. One path to life or many? 2. A Strategy for Origins of Life Research 2.1. Outcomes—key questions and investigations 2.1.1. Domain 1: Theory 2.1.2. Domain 2: Practice 2.1.3. Domain 3: Process 2.1.4. Domain 4: Future studies 2.2. EON Roadmap 2.3. Relationship to NASA Astrobiology Roadmap and Strategy documents and the European AstRoMap Appendix I Appendix II Supplementary Materials References

1 January 2014 in Artificial Life
Verified
Journal Article
Closed access
TFTom Froese
Tom Froese
NVNathaniel Virgo
Nathaniel Virgo
Takashi IkegamiTakashi Ikegami
Takashi Ikegami
Due to recent advances in synthetic biology and artificial life, the origin of life is currently a hot topic of research. We review the literature and argue that the two traditionally competing replicator-first and metabolism-first approaches are merging into one integrated theory of individuation and evolution. We contribute to the maturation of this more inclusive approach by highlighting some problematic assumptions that still lead to an impoverished conception of the phenomenon of life. In particular, we argue that the new consensus has so far failed to consider the relevance of intermediate time scales. We propose that an adequate theory of life must account for the fact that all living beings are situated in at least four distinct time scales, which are typically associated with metabolism, motility, development, and evolution. In this view, self-movement, adaptive behavior, and morphological changes could have already been present at the origin of life. In order to illustrate this possibility, we analyze a minimal model of lifelike phenomena, namely, of precarious, individuated, dissipative structures that can be found in simple reaction-diffusion systems. Based on our analysis, we suggest that processes on intermediate time scales could have already been operative in prebiotic systems. They may have facilitated and constrained changes occurring in the faster-and slower-paced time scales of chemical self-individuation and evolution by natural selection, respectively.

30 August 2007
Verified
Book Chapter
Closed access
PDF file
TFTom Froese
Tom Froese
NVNathaniel Virgo
Nathaniel Virgo
EIEduardo Izquierdo
Eduardo Izquierdo

11 September 2013 in Earth System Dynamics
Verified
Journal Article
Open access
PDF file
ESE. Simoncini
E. Simoncini
NVNathaniel Virgo
Nathaniel Virgo
AKAxel Kleidon
Axel Kleidon
It has long been observed that Earth's atmosphere is uniquely far from its thermochemical equilibrium state in terms of its chemical composition. Studying this state of disequilibrium is important both for understanding the role that life plays in the Earth system, and for its potential role in the detection of life on exoplanets. Here we present a methodology for assessing the strength of the biogeochemical cycling processes that drive disequilibrium in planetary atmospheres. We apply it to the simultaneous presence of CH4 and O2 in Earth's atmosphere, which has long been suggested as a sign of life that could be detected remotely. Using a simplified model, we identify that the most important property to quantify is not the distance from equilibrium, but the power required to drive it. A weak driving force can maintain a high degree of disequilibrium if the residence times of the compounds involved are long; but if the disequilibrium is high and the kinetics fast, we can conclude that the disequilibrium must be driven by a substantial source of energy. Applying this to Earth's atmosphere, we show that the biotically generated portion of the power required to maintain the methane–oxygen disequilibrium is around 0.67 TW, although the uncertainty in this figure is about 10% due to uncertainty in the global CH4 production. Compared to the chemical energy generated by the biota by photosynthesis, 0.67 TW represents only a very small fraction and, perhaps surprisingly, is of a comparable magnitude to abiotically driven geochemical processes at the Earth's surface. We discuss the implications of this new approach, both in terms of enhancing our understanding of the Earth system, and in terms of its impact on the possible detection of distant photosynthetic biospheres.

18 January 2010 in Entropy
Verified
Journal Article
Open access
PDF file
NVNathaniel Virgo
Nathaniel Virgo
Evidence from climate science suggests that a principle of maximum thermodynamic entropy production can be used to make predictions about some physical systems. I discuss the general form of this principle and an inherent problem with it, currently unsolved by theoretical approaches: how to determine which system it should be applied to. I suggest a new way to derive the principle from statistical mechanics, and present a tentative solution to the system boundary problem. I discuss the need for experimental validation of the principle, and its impact on the way we see the relationship between thermodynamics and kinetics.